Browse Element(s) Details


OsAffx.12669.1.S1_at

Description tigr:9630.m05620
TID=OsAffx.12669.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5662010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56600Os.51120.1.S1_at11/112+34667123..34670444NAC-domain containing protein 21/22, putative, expressed
LOC_Os02g56610Os.57394.1.S1_at11/112+34681755..34683854expressed protein
LOC_Os02g56620OsAffx.12669.1.S1_at10/112+34691165..34693845hypothetical protein
LOC_Os02g56630OsAffx.12670.1.S1_at11/112+34714997..34717490Calcium binding EGF domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12669.1.S1_at--651--9891Chr02:34691234..34691253 (20 bp)
TACTATGCCATAGCTTGCGGCACGA
LOC_Os02g56620
OsAffx.12669.1.S1_at--586--10011NONE
TAGCTTGCGGCACGATATATTACAA
NONE
OsAffx.12669.1.S1_at--628--5491Chr02:34693259..34693283 (25 bp)
GAACAGTTCTACTCGTATTGATGAT
LOC_Os02g56620
OsAffx.12669.1.S1_at--490--171Chr02:34693282..34693306 (25 bp)
ATTTTAAAGCTCTTTCTGGTCTGGG
LOC_Os02g56620
OsAffx.12669.1.S1_at--1128--9171Chr02:34693312..34693335 (24 bp)
TGCCACGTCACGCTAAACCAAAGGA
LOC_Os02g56620
OsAffx.12669.1.S1_at--1158--6511Chr02:34693645..34693669 (25 bp)
GTAGACTTGAACAGTTACCTAACCT
LOC_Os02g56620
OsAffx.12669.1.S1_at--256--7591Chr02:34693673..34693697 (25 bp)
GGGCTAGTCGGTACAGAACAGGTAA
LOC_Os02g56620
OsAffx.12669.1.S1_at--865--2471Chr02:34693689..34693713 (25 bp)
AACAGGTAATGGGTCCTCTAATAGA
LOC_Os02g56620
OsAffx.12669.1.S1_at--1162--7211Chr02:34693720..34693744 (25 bp)
GTCGACCTTGATTCATCGGTGCATA
LOC_Os02g56620
OsAffx.12669.1.S1_at--543--5531Chr02:34693749..34693773 (25 bp)
GAAAAATATTCCGACCATGGTGATA
LOC_Os02g56620
OsAffx.12669.1.S1_at--393--1311Chr02:34693791..34693815 (25 bp)
AGATGTCATGAAGCGCTTGTTCTCA
LOC_Os02g56620
Target Sequence 
TACTATGCCATAGCTTGCGGCACGATATATTACAAGATGGACGAGAACAGTTCTACTCGTATTGATGATTTTAAAGCTCT
TTCTGGTCTGGGGGATATGCCACGTCACGCTAAACCAAAGGAATATGTAGACTTGAACAGTTACCTAACCTGTGGGGCTA
GTCGGTACAGAACAGGTAATGGGTCCTCTAATAGAGAGGTTGTCGACCTTGATTCATCGGTGCATACAAAGAAAAATATT
CCGACCATGGTGATATGGTATCTGCCAGTGAAAGATGTCATGAAGCGCTTGTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis