Browse Element(s) Details


Os.50737.1.S1_at

Description gb:AK071602.1
DB_XREF= gi:32981625
TID=Os.50737.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023102D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102D17, full insert sequence.
FL= gb:AK071602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5657011/11RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os12g218101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56540Os.7967.1.S1_at11/112+34626439..34630743Kinesin motor domain containing protein, expressed
LOC_Os02g56550Os.18740.1.S1_at10/112+34632017..34635209ABC transporter family protein, expressed
LOC_Os02g56560Os.12673.1.S1_at11/112+34639003..34643257Casein kinase I, putative, expressed
LOC_Os02g56570Os.50737.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570Os.50736.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570OsAffx.7999.1.S1_at1/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56580OsAffx.12668.1.S1_at11/112+34654229..34655050P21-Rho-binding domain containing protein
LOC_Os02g56590OsAffx.24896.1.S1_at11/112+34661647..34664054hypothetical protein
LOC_Os02g56600Os.51120.1.S1_at11/112+34667123..34670444NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50737.1.S1_at--1125--4291Chr02:34651899..34652131 (25 bp)
CCTTTGGGAGCTCATGTGGTCTATG
LOC_Os02g56570
Os.50737.1.S1_at--1053--7032Chr02:34652134..34652158 (25 bp)
GTACAATCCAGGTCTCTTTTCTATG
LOC_Os02g56570
Os.50737.1.S1_at--742--5431Chr02:34652231..34652255 (25 bp)
GAACAGAAAAACTTACAGGCGGCTA
LOC_Os02g56570
Os.50737.1.S1_at--1157--6471Chr02:34652269..34652293 (25 bp)
GATACCTCTATCTGTGTTCATTGTG
LOC_Os02g56570
Os.50737.1.S1_at--238--3891Chr02:34652280..34652304 (25 bp)
CTGTGTTCATTGTGGCTAGTGTCAT
LOC_Os02g56570
Os.50737.1.S1_at--767--6491Chr02:34652473..34652497 (25 bp)
GATATCACTGGAAGTCTGGATGCAA
LOC_Os02g56570
Os.50737.1.S1_at--1119--9371Chr02:34652707..34652731 (25 bp)
TCGATTGGGCTTTTTGTGAACTGGA
LOC_Os02g56570
Os.50737.1.S1_at--361--8071Chr02:34652729..34652753 (25 bp)
GGAGAAGCAGCTACATCGCAATTTT
LOC_Os02g56570
Os.50737.1.S1_at--1104--511Chr02:34652743..34652767 (25 bp)
ATCGCAATTTTTCCCCATTTTTGAT
LOC_Os02g56570
Os.50737.1.S1_at--106--8131Chr02:34652821..34652845 (25 bp)
GGAACGCCAATCCTGTAAAGGTACA
LOC_Os02g56570
Os.50737.1.S1_at--1090--7811Chr02:34652859..34652883 (25 bp)
GGTATCGGTGGAATTATGCTGCAAT
LOC_Os02g56570
Target Sequence 
CCTTTGGGAGCTCATGTGGTCTATGGAGTACAATCCAGGTCTCTTTTCTATGTTGGAGAGTGATAACAGTACATCTCAAG
CAAACACAAAAGATGAAAATGCCTTAAAGCAGTGTGGAAAATTCGAACAGAAAAACTTACAGGCGGCTAAAAAGGAAGAG
CAGATACCTCTATCTGTGTTCATTGTGGCTAGTGTCATAGAGGCTAGAAACAAGCAGATACTGACTGATGCAAAAGGTCT
AGACGATGTCGTGAAGATATTAAACGATATCACTGGAAGTCTGGATGCAAAGAAGGCATGCAGAGGGGCACTGAAGATTC
ATGAGAGATACCTAACCACAGTAAAAGCATGATAGTAGCATTTACAGATCCTTATTAATACATCTTAAGTGACGATATTC
GATTGGGCTTTTTGTGAACTGGAGAAGCAGCTACATCGCAATTTTTCCCCATTTTTGATANGTGTGTGTATTATACAATT
CTTTGATTTTCTTTGTAATACTACAAAAGAAAGGAACGCCAATCCTGTAAAGGTACATCACGAAATGTTTGGTATCGGTG
GAATTATGCTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis