Browse Element(s) Details


Os.12673.1.S1_at

Description gb:AK111554.1
DB_XREF= gi:37988217
TID=Os.12673.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052A13, full insert sequence.
FL= gb:AK111554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5656011/11Casein kinase I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56530Os.47757.1.A1_at11/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56530Os.27744.1.S1_at10/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56540Os.7967.1.S1_at11/112+34626439..34630743Kinesin motor domain containing protein, expressed
LOC_Os02g56550Os.18740.1.S1_at10/112+34632017..34635209ABC transporter family protein, expressed
LOC_Os02g56560Os.12673.1.S1_at11/112+34639003..34643257Casein kinase I, putative, expressed
LOC_Os02g56570Os.50737.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570Os.50736.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570OsAffx.7999.1.S1_at1/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56580OsAffx.12668.1.S1_at11/112+34654229..34655050P21-Rho-binding domain containing protein
LOC_Os02g56590OsAffx.24896.1.S1_at11/112+34661647..34664054hypothetical protein
LOC_Os02g56600Os.51120.1.S1_at11/112+34667123..34670444NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0016310biological_processphosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009506cellular_componentplasmodesma
GO:0004681molecular_functioncasein kinase I activity
GO:0004712molecular_functionprotein threonine/tyrosine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12673.1.S1_at--881--1831Chr02:34642907..34642931 (25 bp)
ACGCTGTTTGCGACTCTGTAAATGA
LOC_Os02g56560
Os.12673.1.S1_at--564--7931Chr02:34642934..34642958 (25 bp)
GGATTATCACCTATTTGTCAACAGT
LOC_Os02g56560
Os.12673.1.S1_at--1085--10791Chr02:34642948..34642972 (25 bp)
TTGTCAACAGTTCACCAGGAGCATC
LOC_Os02g56560
Os.12673.1.S1_at--572--8071Chr02:34642965..34642989 (25 bp)
GGAGCATCCCATAATTTCATGGTGC
LOC_Os02g56560
Os.12673.1.S1_at--673--8411Chr02:34642993..34643017 (25 bp)
GGCCCTGTTGTATCATTGCTTCATA
LOC_Os02g56560
Os.12673.1.S1_at--153--10811Chr02:34643030..34643054 (25 bp)
TTGTTTTTGTTGTGTGTGTTCGCTG
LOC_Os02g56560
Os.12673.1.S1_at--1138--7411Chr02:34643045..34643069 (25 bp)
GTGTTCGCTGTTGCGTTAGGGCCAA
LOC_Os02g56560
Os.12673.1.S1_at--222--6791Chr02:34643059..34643083 (25 bp)
GTTAGGGCCAAGTCCTAGCTTTGTG
LOC_Os02g56560
Os.12673.1.S1_at--930--5651Chr02:34643146..34643170 (25 bp)
GACTTGGCAACTTTTCCTGAGAGAC
LOC_Os02g56560
Os.12673.1.S1_at--462--6011Chr02:34643164..34643188 (25 bp)
GAGAGACAAGTATTCGTGTATCCCC
LOC_Os02g56560
Os.12673.1.S1_at--300--3271Chr02:34643200..34643224 (25 bp)
CAACTCTGGATTTGCTTATTCAACA
LOC_Os02g56560
Target Sequence 
ACGCTGTTTGCGACTCTGTAAATGACAGGATTATCACCTATTTGTCAACAGTTCACCAGGAGCATCCCATAATTTCATGG
TGCTCCGGCCCTGTTGTATCATTGCTTCATAGATAGCAATAATTTGTTTTTGTTGTGTGTGTTCGCTGTTGCGTTAGGGC
CAAGTCCTAGCTTTGTGATGATTAATTTAGAGGTGGTCAAGATTCAACATATTTATGTTTCTTTACCTTACCCCCCCTGG
ACTTGGCAACTTTTCCTGAGAGACAAGTATTCGTGTATCCCCCCCTTCTTATTCAACTCTGGATTTGCTTATTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis