Browse Element(s) Details


Os.15769.1.S1_at

Description gb:AK103377.1
DB_XREF= gi:32988586
TID=Os.15769.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127D10, full insert sequence.
FL= gb:AK103377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5649011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56440Os.29925.1.S1_at11/112+34553455..34554303expressed protein
LOC_Os02g56450OsAffx.24893.1.S1_at11/112+34556318..34558297hypothetical protein
LOC_Os02g56460Os.6757.1.S1_at11/112+34558417..34560253NmrA-like family protein, expressed
LOC_Os02g56470OsAffx.3090.1.S1_at10/112+34565267..34567029hypothetical protein
LOC_Os02g56480OsAffx.12666.1.S1_s_at11/112+34568459..34570262PB1 domain containing protein, expressed
LOC_Os02g56490Os.15769.1.S1_at11/112+34578332..34579354expressed protein
LOC_Os02g56500OsAffx.12667.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_at10/112+34590769..34594118expressed protein
LOC_Os02g56510Os.6567.1.S1_at11/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56510Os.51613.1.S1_x_at2/112+34603539..34609180Phosphate transporter 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15769.1.S1_at--712--8191Chr02:34578877..34578901 (25 bp)
GGAAGAAGACCAGCTGCTGCGCTGC
LOC_Os02g56490
Os.15769.1.S1_at--695--9471Chr02:34578840..34578864 (25 bp)
TCTGTGCGTTTCTCTGCGCCGTTAT
LOC_Os02g56490
Os.15769.1.S1_at--94--9171Chr02:34578826..34578850 (25 bp)
TGCGCCGTTATGCTCGTCGTGTCGC
LOC_Os02g56490
Os.15769.1.S1_at--432--2231Chr02:34578774..34578798 (25 bp)
AAGAAGCAAAGGTGAGGTCGTCGTC
LOC_Os02g56490
Os.15769.1.S1_at--353--5791Chr02:34578643..34578667 (25 bp)
GACGACAGCAAGCATGAGGTTCCGA
LOC_Os02g56490
Os.15769.1.S1_at--335--691Chr02:34578630..34578654 (25 bp)
ATGAGGTTCCGAGTGGCCCGAATCC
LOC_Os02g56490
Os.15769.1.S1_at--951--6491Chr02:34578584..34578608 (25 bp)
GATAGATCCATGTCGTGTCCTGTTC
LOC_Os02g56490
Os.15769.1.S1_at--547--9651Chr02:34578543..34578567 (25 bp)
TCAGCTTGCAGTTTAGGTGTATTGT
LOC_Os02g56490
Os.15769.1.S1_at--550--6251Chr02:34578418..34578442 (25 bp)
GATGGGCATTTACTCTAGATTACTA
LOC_Os02g56490
Os.15769.1.S1_at--340--10051Chr02:34578403..34578427 (25 bp)
TAGATTACTACTCTCTGCTCATGTT
LOC_Os02g56490
Os.15769.1.S1_at--227--9491Chr02:34578390..34578414 (25 bp)
TCTGCTCATGTTCCATTGCATTGGA
LOC_Os02g56490
Target Sequence 
GGAAGAAGACCAGCTGCTGCGCTGCCGCTTCTCGGCCTCTGTGCGTTTCTCTGCGCCGTTATGCTCGTCGTGTCGCTGGC
TCCTCCTCCGGGGGAAGAAGAAGAAGAAGCAAAGGTGAGGTCGTCGTCGTTGCCAGCGGCGGCGACGTCGGTCCCGGCCG
GTGGACGGCGCCTTCTGCTGCCGGCGGCGAGGACGAGGAGGTTCCGGCCACGGAGGTGGAACTCGGCCGGCATCGACGAC
AGCAAGCATGAGGTTCCGAGTGGCCCGAATCCAGATNCCAATAGATGATNATAGATAGATCCATGTCGTGTCCTGTTCTT
CAGTGCTGCTTCTCNTCAGCTTGCAGTTTAGGTGTATTGTTCCNTGATCTCTCTTCTATTTTAGTATGGTTTNTCTTTTC
GGCTTTGCTNTCGTTCAGGTAGGATTTGATAAAAATCCTTGGTAAGATAATGTACAAACAGATGGGCATTTACTCTAGAT
TACTACTCTCTGCTCATGTTCCATTGCATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis