Browse Element(s) Details


OsAffx.24893.1.S1_at

Description tigr:9630.m05602
TID=OsAffx.24893.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5645011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56410Os.53217.1.S1_x_at3/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.43567.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.38172.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410OsAffx.26987.1.S1_at1/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56420Os.55685.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.12665.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.28164.2.S1_at3/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56440Os.29925.1.S1_at11/112+34553455..34554303expressed protein
LOC_Os02g56450OsAffx.24893.1.S1_at11/112+34556318..34558297hypothetical protein
LOC_Os02g56460Os.6757.1.S1_at11/112+34558417..34560253NmrA-like family protein, expressed
LOC_Os02g56470OsAffx.3090.1.S1_at10/112+34565267..34567029hypothetical protein
LOC_Os02g56480OsAffx.12666.1.S1_s_at11/112+34568459..34570262PB1 domain containing protein, expressed
LOC_Os02g56490Os.15769.1.S1_at11/112+34578332..34579354expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24893.1.S1_at--626--7651Chr02:34557726..34557750 (25 bp)
GGGATGATTCTCTGCCATTTCTACT
LOC_Os02g56450
OsAffx.24893.1.S1_at--213--3831Chr02:34557737..34557761 (25 bp)
CTGCCATTTCTACTTCCTGGAAGAG
LOC_Os02g56450
OsAffx.24893.1.S1_at--1029--771Chr02:34557834..34557858 (25 bp)
ATGTGCCGAAGCTTTGTGTTCTCAA
LOC_Os02g56450
OsAffx.24893.1.S1_at--214--2231Chr02:34557899..34557923 (25 bp)
ACAATGATTGCTGTGTTGCTTACGC
LOC_Os02g56450
OsAffx.24893.1.S1_at--883--6671Chr02:34557913..34557937 (25 bp)
GTTGCTTACGCAAACTTGTGTACAA
LOC_Os02g56450
OsAffx.24893.1.S1_at--674--132Chr02:34557937..34557961 (25 bp)
ATTAGTTCCAAGCTACAATCAGTCT
LOC_Os02g56450
OsAffx.24893.1.S1_at--444--3191Chr02:34557952..34557976 (25 bp)
CAATCAGTCTTTATCTGGGAGCAAA
LOC_Os02g56450
OsAffx.24893.1.S1_at--723--10011Chr02:34558069..34558093 (25 bp)
TAGCTTGTGTGCATCATGGAATTTC
LOC_Os02g56450
OsAffx.24893.1.S1_at--826--5311Chr02:34558159..34558183 (25 bp)
GAAGGTATGGCTGTTGTTTGCTATA
LOC_Os02g56450
OsAffx.24893.1.S1_at--606--8171Chr02:34558231..34558255 (25 bp)
GGAACATATCAAGGTGCTCTGCAAT
LOC_Os02g56450
OsAffx.24893.1.S1_at--68--7791Chr02:34558243..34558267 (25 bp)
GGTGCTCTGCAATTCTACTATGTTA
LOC_Os02g56450
Target Sequence 
GGGATGATTCTCTGCCATTTCTACTTCCTGGAAGAGCGGTTTTAGAATATCAAGAATTTGTGACTCATGTTAAGATGACA
GAACAATCAGTTTCGAAAGGTGAAACGGATGTGCCGAAGCTTTGTGTTCTCAAGTTCAGTTTGGACAAATTTTCAAATTA
TTCAGTTGGAGATACAATGATTGCTGTGTTGCTTACGCAAACTTGTGTACAATTAGTTCCAAGCTACAATCAGTCTTTAT
CTGGGAGCAAAAATCACTACAAACTCTTGATGACACAACATATGTCAGTCATTGCAAACTATGAAATGATTTGGTGGAAG
TCAGAGCTTGGTGGGGGCAAGATTAGCTTGTGTGCATCATGGAATTTCTGGGATCTGTGTTTTTGTTGCAAGCAAATGTC
TACAGAAATTATGGCTGTTGGATTATCTGGTGTGAAGGTATGGCTGTTGTTTGCTATATCAGAGCTGTGGTTACAAAGAA
AACAGCTAAAACTTGCATTATTAGAGGAACATATCAAGGTGCTCTGCAATTCTACTATGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis