Browse Element(s) Details


Os.55685.1.S1_at

Description gb:AK108554.1
DB_XREF= gi:32993763
TID=Os.55685.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E09, full insert sequence.
FL= gb:AK108554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5642011/11wall-associated kinase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56390Os.14919.1.S1_at5/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390Os.56216.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390OsAffx.29313.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56400OsAffx.3089.1.S1_at11/112+34525687..34528410Calcium binding EGF domain containing protein
LOC_Os02g56410Os.53217.1.S1_x_at3/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.43567.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.38172.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410OsAffx.26987.1.S1_at1/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56420Os.55685.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.12665.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.28164.2.S1_at3/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56440Os.29925.1.S1_at11/112+34553455..34554303expressed protein
LOC_Os02g56450OsAffx.24893.1.S1_at11/112+34556318..34558297hypothetical protein
LOC_Os02g56460Os.6757.1.S1_at11/112+34558417..34560253NmrA-like family protein, expressed
LOC_Os02g56470OsAffx.3090.1.S1_at10/112+34565267..34567029hypothetical protein
LOC_Os02g56480OsAffx.12666.1.S1_s_at11/112+34568459..34570262PB1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55685.1.S1_at--744--391Chr02:34547325..34547349 (25 bp)
ATCAGGCGAGTGGACCGGTTTTGAC
LOC_Os02g56420
Os.55685.1.S1_at--193--3971Chr02:34547340..34547364 (25 bp)
CGGTTTTGACCAGGCAGACTGCACA
LOC_Os02g56420
Os.55685.1.S1_at--1007--8072Chr08:19505874..19505898 (25 bp)
GGAGCCTTATCCAGTATTTTTCAAA
NONE
Os.55685.1.S1_at--585--3672Chr08:19506002..19506026 (25 bp)
CTTTCTTCCCACTCATGTGAGCAAA
NONE
Os.55685.1.S1_at--884--8652Chr08:19506017..19506041 (25 bp)
TGTGAGCAAAACACCCTGTCAATTT
NONE
Os.55685.1.S1_at--879--10851Chr02:34547558..34547582 (25 bp)
TTGGTATTTCTGTTTCGCTGGATCA
LOC_Os02g56420
Os.55685.1.S1_at--515--6431Chr02:34547578..34547602 (25 bp)
GATCAGGTGTATCGACGGCCATTTA
LOC_Os02g56420
Os.55685.1.S1_at--212--10671Chr02:34547619..34547643 (25 bp)
TTCCAACATGTTTAAAGCCGCCCTA
LOC_Os02g56420
Os.55685.1.S1_at--570--1671Chr02:34547634..34547658 (25 bp)
AGCCGCCCTAAAAGACTGCATCATG
LOC_Os02g56420
Os.55685.1.S1_at--787--3532Chr08:19506148..19506172 (25 bp)
CATGCCCCTGTTAAGATTGCTGTTA
NONE
Os.55685.1.S1_at--937--3872Chr08:19506167..19506191 (25 bp)
CTGTTATTTTTGTCGGAGTCCTGGA
NONE
Target Sequence 
ATCAGGCGAGTGGACCGGTTTTGACCAGGCAGACTGCACAGTTTCAAGGAATCCTGGGAGCCTTATCCAGTATTTTTCAA
ACCTGAAAAGGTTGCATTTAGGCCTAGAAGGGTTTGCAGTTAGCAGCAGAGGACAATGGTCTGAGACCATCGTAGAGATA
GCTGAAAGCAAGCAATTTTGGAACCTTTCTTCCCACTCATGTGAGCAAAACACCCTGTCAATTTTTGTTAAGGTTGGTAT
TTCTGTTTCGCTGGATCAGGTGTATCGACGGCCATTTAGTTTTATTTCAATAACTTCCAACATGTTTAAAGCCGCCCTAA
AAGACTGCATCATGCCCCTGTTAAGATTGCTGTTATTTTTGTCGGAGTCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis