Browse Element(s) Details


Os.38172.1.S1_x_at

Description gb:NM_191548.1
DB_XREF= gi:34910179
GEN=OSJNBb0036G09.8
TID=Os.38172.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0036G09.8 (OSJNBb0036G09.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0036G09.8 (OSJNBb0036G09.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g437606/11transposon protein, putative, unclassified
LOC_Os04g466905/11hAT family dimerisation domain containing protein
LOC_Os01g063605/11transposon protein, putative, unclassified
LOC_Os01g067804/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g461694/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os12g439804/11transposon protein, putative, unclassified, expressed
LOC_Os03g030344/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g339204/11transposon protein, putative, unclassified
LOC_Os08g371904/11transposon protein, putative, unclassified
LOC_Os07g033503/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g592803/11transposon protein, putative, unclassified
LOC_Os05g360803/11transposon protein, putative, unclassified
LOC_Os07g354203/11transposon protein, putative, unclassified
LOC_Os08g063003/11transposon protein, putative, unclassified
LOC_Os07g034403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g015503/11transposon protein, putative, unclassified
LOC_Os07g035703/11transposon protein, putative, unclassified
LOC_Os03g153103/11transposon protein, putative, unclassified
LOC_Os04g592403/11transposon protein, putative, unclassified
LOC_Os06g019343/11bell-like homeodomain protein 3, putative, expressed
LOC_Os02g022102/11aminotransferase, class III family protein, expressed
LOC_Os11g024902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g369002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g099302/11transposon protein, putative, unclassified
LOC_Os02g502602/11transposon protein, putative, unclassified
LOC_Os01g105702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g564102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g373102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g387302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g472102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g335102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g525702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g493702/11transposon protein, putative, unclassified
LOC_Os03g556902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g434002/11transposon protein, putative, unclassified, expressed
LOC_Os03g079302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g510292/11Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os05g506102/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g605242/11transposon protein, putative, unclassified
LOC_Os01g418501/11transposon protein, putative, unclassified
LOC_Os12g248901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g035501/11transposon protein, putative, unclassified
LOC_Os09g295841/11wall-associated kinase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43720Os.54341.1.S1_at11/1112+27120899..27126815early-responsive to dehydration protein, putative, expressed
LOC_Os12g43730OsAffx.7882.1.S1_x_at1/1112+27128865..27132954expressed protein
LOC_Os12g43740NANA12+27135120..27136028oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g43750Os.55110.1.S1_at11/1112+27139430..27140307expressed protein
LOC_Os12g43760Os.38172.1.S1_x_at6/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.43567.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.53217.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43770OsAffx.32181.1.S1_at11/1112+27154482..27155870F-box domain containing protein
LOC_Os12g43780Os.25475.1.S1_at11/1112+27157385..27158406expressed protein
LOC_Os12g43790NANA12+27163743..27164249bZIP transcription factor family protein, expressed
LOC_Os12g43810Os.52999.1.S1_at11/1112+27171897..27172508expressed protein
LOC_Os12g43820OsAffx.20109.1.S1_at11/1112+27175674..27176105expressed protein
LOC_Os12g43830Os.23586.1.S1_at11/1112+27176739..27179569expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006510biological_processATP-dependent proteolysis
GO:0006561biological_processproline biosynthesis
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009058biological_processbiosynthesis
GO:0009102biological_processbiotin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009826biological_processunidimensional cell growth
GO:0009860biological_processpollen tube growth
GO:0009865biological_processpollen tube adhesion
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0010205biological_processphotoinhibition
GO:0010206biological_processphotosystem II repair
GO:0019748biological_processsecondary metabolism
GO:0042538biological_processhyperosmotic salinity response
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003867molecular_function4-aminobutyrate transaminase activity
GO:0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0008233molecular_functionpeptidase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
GO:0016298molecular_functionlipase activity
GO:0016301molecular_functionkinase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016789molecular_functioncarboxylic ester hydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38172.1.S1_x_at--734--987316Chr12:3890996..3891020 (25 bp)
TACAGGTTTACCATATGCCGACGAG
NONE
Os.38172.1.S1_x_at--730--787320Chr12:2998277..2998301 (25 bp)
GGTTTACCATATGCCGACGAGAGGG
NONE
Os.38172.1.S1_x_at--163--343152Chr12:15391624..15391648 (25 bp)
CAGTTTTACCCAAGTTGTTACTCAG
NONE
Os.38172.1.S1_x_at--756--1033262Chr12:2998655..2998679 (25 bp)
TTTAAGTTTGAAGGCGACCGTCGAT
NONE
Os.38172.1.S1_x_at--1003--213112Chr12:15391682..15391705 (24 bp)
ACAGAGTGCACGAATATCGAGGCGC
NONE
Os.38172.1.S1_x_at--666--335102Chr11:23210434..23210458 (25 bp)
CACGAATATCGAGGCGCAACTGGGT
NONE
Os.38172.1.S1_x_at--109--7652Chr02:25413417..25413786 (25 bp)
GGGATATGGCTGAGCTGGCGCCGAC
NONE
Os.38172.1.S1_x_at--434--32959Chr12:26678162..26678186 (25 bp)
CACACCGGGCGGTTGCACGTGACAA
NONE
Os.38172.1.S1_x_at--397--3771Chr01:30906701..30906725 (25 bp)
CTCGGATTCGCCGAAGGTTGCTCGA
NONE
Os.38172.1.S1_x_at--647--91Chr01:30906706..30906730 (25 bp)
ATTCGCCGAAGGTTGCTCGACGGCG
NONE
Os.38172.1.S1_x_at--233--817106Chr12:15382851..15382875 (25 bp)
GGAACTCGACGCTAGCGTCGGATTG
NONE
Target Sequence 
TACAGGTTTACCATATGCCGACGAGAGGGGTCCCAGACCAACAACAGTTTTACCCAAGTTGTTACTCAGATTTTAAGTTT
GAAGGCGACCGTCGATACTCGCACAGAGTGCACGAATATCGAGGCGCAACTGGGTGGTTACAAGGGGATATGGCTGAGCT
GGCGCCGACGTGGCGCCTACGTGGCTGCCACGCGGGCCGGCGGGAGGTAGACGACGACCTGGCCGCGAATGGACGGCGGG
CGGCGGCGGCGAGCGGCGGAGCGAACCACGGTGATACGGGCAAAAGCGTGCACACCGGGCGGTTGCACGTGACAAGGGGA
GACGAGCCAACGGCTCGGATTCGCCGAAGGTTGCTCGACGGCGGCGGATTGCGGCGGCGGCAACCGGCGGCGGGAGAAGA
GGGAAACGGCGACGAGGTCACGAGAGGTCGATTCCCGGCGGTGAGAGCATCTACGCGGCGTCGGGAACTCGACGCTAGCG
TCGGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38172.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis