Browse Element(s) Details


OsAffx.20109.1.S1_at

Description tigr:9640.m04318
TID=OsAffx.20109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY058136 AT4g21620F17L22_80
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4382011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43760Os.38172.1.S1_x_at6/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.43567.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.53217.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43770OsAffx.32181.1.S1_at11/1112+27154482..27155870F-box domain containing protein
LOC_Os12g43780Os.25475.1.S1_at11/1112+27157385..27158406expressed protein
LOC_Os12g43790NANA12+27163743..27164249bZIP transcription factor family protein, expressed
LOC_Os12g43810Os.52999.1.S1_at11/1112+27171897..27172508expressed protein
LOC_Os12g43820OsAffx.20109.1.S1_at11/1112+27175674..27176105expressed protein
LOC_Os12g43830Os.23586.1.S1_at11/1112+27176739..27179569expressed protein
LOC_Os12g43840Os.54809.1.S1_at11/1112+27179922..27185459TPR Domain containing protein, expressed
LOC_Os12g43850Os.54634.1.S1_at11/1112+27186781..27191737retrotransposon protein, putative, unclassified
LOC_Os12g43860Os.40360.1.S1_x_at1/1112+27200181..27200807hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20109.1.S1_at--1107--3711Chr12:27175799..27175823 (25 bp)
CTACGACTTCGGCATCCCGGCAGGC
LOC_Os12g43820
OsAffx.20109.1.S1_at--541--2451Chr12:27175842..27175866 (25 bp)
AACAACCCGTACAACGGCGATCCTG
LOC_Os12g43820
OsAffx.20109.1.S1_at--891--7031Chr12:27175850..27175874 (25 bp)
GTACAACGGCGATCCTGCAGCGTGG
LOC_Os12g43820
OsAffx.20109.1.S1_at--848--3251Chr12:27175853..27175877 (25 bp)
CAACGGCGATCCTGCAGCGTGGGCA
LOC_Os12g43820
OsAffx.20109.1.S1_at--691--1631Chr12:27175868..27175892 (25 bp)
AGCGTGGGCAGCTGGGTACGGCAGC
LOC_Os12g43820
OsAffx.20109.1.S1_at--760--891Chr12:27175936..27175960 (25 bp)
AGGCGCCGTCGATGGTTTGCTCCGA
LOC_Os12g43820
OsAffx.20109.1.S1_at--2--4011Chr12:27175942..27175966 (25 bp)
CGTCGATGGTTTGCTCCGACAAGGG
LOC_Os12g43820
OsAffx.20109.1.S1_at--626--4751Chr12:27175985..27176009 (25 bp)
GCTGACCTGCCCGAAGAAGTGCTTC
LOC_Os12g43820
OsAffx.20109.1.S1_at--726--1751Chr12:27175989..27176013 (25 bp)
ACCTGCCCGAAGAAGTGCTTCGTCT
LOC_Os12g43820
OsAffx.20109.1.S1_at--343--4531Chr12:27175993..27176017 (25 bp)
GCCCGAAGAAGTGCTTCGTCTCCTT
LOC_Os12g43820
OsAffx.20109.1.S1_at--634--1671Chr12:27176019..27176043 (25 bp)
AGCCGCTCCGGCAATGGCTACGCCG
LOC_Os12g43820
Target Sequence 
CTACGACTTCGGCATCCCGGCAGGCTTCTTCGTCCCCGGCACCAACAACCCGTACAACGGCGATCCTGCAGCGTGGGCAG
CTGGGTACGGCAGCGCCGCCGCCGGCGACGTCGGCGGGTTCGGGAATGGTGGGGCGGAGGCGCCGTCGATGGTTTGCTCC
GACAAGGGGCCATGCAACGGCAAGAAGCTGACCTGCCCGAAGAAGTGCTTCGTCTCCTTCAGCCGCTCCGGCAATGGCTA
CGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis