Browse Element(s) Details


Os.53217.1.S1_x_at

Description gb:AK071416.1
DB_XREF= gi:32981439
TID=Os.53217.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093A18, full insert sequence.
FL= gb:AK071416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0303411/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g153104/11transposon protein, putative, unclassified
LOC_Os05g506104/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g387304/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g019344/11bell-like homeodomain protein 3, putative, expressed
LOC_Os02g339204/11transposon protein, putative, unclassified
LOC_Os02g335104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g379903/11Sugar transporter family protein, expressed
LOC_Os05g360803/11transposon protein, putative, unclassified
LOC_Os09g295843/11wall-associated kinase 3, putative, expressed
LOC_Os04g434003/11transposon protein, putative, unclassified, expressed
LOC_Os02g564103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g461693/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g063002/11transposon protein, putative, unclassified
LOC_Os03g079302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g437602/11transposon protein, putative, unclassified
LOC_Os03g118742/11expressed protein
LOC_Os11g024902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g466901/11hAT family dimerisation domain containing protein
LOC_Os01g418501/11transposon protein, putative, unclassified
LOC_Os06g510291/11Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os07g033501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g034401/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02980Os.18211.1.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_x_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g03000OsAffx.3120.1.S1_at11/113+1205217..1206205Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g03010OsAffx.12716.1.S1_at11/113+1208153..1208697expressed protein
LOC_Os03g03020Os.1148.1.S1_at11/113+1210568..121280950S ribosomal protein L11, chloroplast precursor, putative, expressed
LOC_Os03g03034Os.53217.1.S1_x_at11/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.10510.1.S1_at10/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.43567.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.38172.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.9332.2.S1_x_at2/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.56310.1.A1_s_at1/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03050Os.38395.1.S1_at11/113+1237693..1238873expressed protein
LOC_Os03g03050Os.38395.3.S1_x_at6/113+1237693..1238873expressed protein
LOC_Os03g03050Os.38395.2.S1_x_at5/113+1237693..1238873expressed protein
LOC_Os03g03060Os.38395.4.S1_x_at9/113+1241934..1247317transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g03070Os.4706.1.S1_a_at11/113+1248228..1250128K-box region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006510biological_processATP-dependent proteolysis
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009058biological_processbiosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009826biological_processunidimensional cell growth
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0010205biological_processphotoinhibition
GO:0010206biological_processphotosystem II repair
GO:0015770biological_processsucrose transport
GO:0019748biological_processsecondary metabolism
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0005887cellular_componentintegral to plasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005351molecular_functionsugar porter activity
GO:0008233molecular_functionpeptidase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0016298molecular_functionlipase activity
GO:0016301molecular_functionkinase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016789molecular_functioncarboxylic ester hydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53217.1.S1_x_at--137--1471Chr03:1222830..1222854 (25 bp)
AGAAGGCCAAGCTCTACTCCGACGA
LOC_Os03g03034
Os.53217.1.S1_x_at--869--3311Chr03:1222778..1222802 (25 bp)
CAGCTTCAACGTCCGCAAGGAGACC
LOC_Os03g03034
Os.53217.1.S1_x_at--658--971Chr03:1222761..1222785 (25 bp)
AGGAGACCGTGCACAACTGGCGCGA
LOC_Os03g03034
Os.53217.1.S1_x_at--329--429339Chr12:2997461..2997481 (21 bp)
CCTTCAGTCCCAGGAAACAGTGCTG
NONE
Os.53217.1.S1_x_at--629--249242Chr12:2997472..2997496 (25 bp)
AACAGTGCTGGTATCACAGGAAGAC
NONE
Os.53217.1.S1_x_at--719--10179Chr06:308402..308426 (25 bp)
TATCACAGCAACAAAGGTCTCTTTA
NONE
Os.53217.1.S1_x_at--565--703346Chr12:2997539..2997563 (25 bp)
GTACAGTCATGTTGGGCTGCGGACA
NONE
Os.53217.1.S1_x_at--708--81312Chr08:25098494..25098518 (25 bp)
GGACAGATCCCAAGCTCACAACTGC
NONE
Os.53217.1.S1_x_at--233--1085123Chr12:5481786..5481810 (25 bp)
TTGGACCAAACAACACAGGCGCGAC
NONE
Os.53217.1.S1_x_at--457--4572Chr04:27465450..27465474 (25 bp)
GCGCGACTTGGGAATTAGGCCGAAA
NONE
Os.53217.1.S1_x_at--39--553347Chr12:2997651..2997675 (25 bp)
GAAACCCTAAAACTCATCGTAGCCG
NONE
Target Sequence 
AGAAGGCCAAGCTCTACTCCGACGACCCGGCCAAGAAGATCCGCCTCTCCACCAGCTTCAACGTCCGCAAGGAGACCGTG
CACAACTGGCGCGACTACCTCCGCCTCCACTGCTACCCGCTTCACCGCTACCTCCCTGATTGGCCATCCAACCCCCCTTC
CTTCAGTCCCAGGAAACAGTGCTGGTATCACAGGAAGACAGAATATCACAGCAACAAAGGTCTCTTTATTATAGAGTAGA
GGTACAGTCATGTTGGGCTGCGGACAGATCCCAAGCTCACAACTGCATTGCAAAAAGGGAAACGGAAGCCAAGACTTGGA
CCAAACAACACAGGCGCGACTTGGGAATTAGGCCGAAACCCTAAAACTCATCGTAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53217.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis