Browse Element(s) Details


Os.10510.1.S1_at

Description gb:AK068438.1
DB_XREF= gi:32978456
TID=Os.10510.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154K17, full insert sequence.
FL= gb:AK104414.1 gb:AK068438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0303410/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02980Os.18211.1.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_x_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g03000OsAffx.3120.1.S1_at11/113+1205217..1206205Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g03010OsAffx.12716.1.S1_at11/113+1208153..1208697expressed protein
LOC_Os03g03020Os.1148.1.S1_at11/113+1210568..121280950S ribosomal protein L11, chloroplast precursor, putative, expressed
LOC_Os03g03034Os.53217.1.S1_x_at11/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.10510.1.S1_at10/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.43567.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.38172.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.9332.2.S1_x_at2/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.56310.1.A1_s_at1/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03050Os.38395.1.S1_at11/113+1237693..1238873expressed protein
LOC_Os03g03050Os.38395.3.S1_x_at6/113+1237693..1238873expressed protein
LOC_Os03g03050Os.38395.2.S1_x_at5/113+1237693..1238873expressed protein
LOC_Os03g03060Os.38395.4.S1_x_at9/113+1241934..1247317transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g03070Os.4706.1.S1_a_at11/113+1248228..1250128K-box region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10510.1.S1_at--805--7751NONE
GGTGATCAGCTACAGGCGCTAAGCA
NONE
Os.10510.1.S1_at--794--3471Chr03:1214269..1214293 (25 bp)
CAGGCGCTAAGCAACGGAAGATACA
LOC_Os03g03034
Os.10510.1.S1_at--1023--7471Chr03:1214239..1214263 (25 bp)
GTGTGGCACCGTGCTGTCGTCAACT
LOC_Os03g03034
Os.10510.1.S1_at--944--2351Chr03:1214209..1214233 (25 bp)
AAAGCGAGGATGTCCGTCGCATCGT
LOC_Os03g03034
Os.10510.1.S1_at--755--6711Chr03:1214078..1214102 (25 bp)
GTTCTGGAGCAGAAACCTCGACCAA
LOC_Os03g03034
Os.10510.1.S1_at--196--1431Chr03:1214068..1214092 (25 bp)
AGAAACCTCGACCAAGAACACTGCT
LOC_Os03g03034
Os.10510.1.S1_at--75--5511Chr03:1214053..1214077 (25 bp)
GAACACTGCTTGGAGCTCTTCAGAA
LOC_Os03g03034
Os.10510.1.S1_at--394--5911Chr03:1214041..1214065 (25 bp)
GAGCTCTTCAGAACAACACCTACAG
LOC_Os03g03034
Os.10510.1.S1_at--191--2471Chr03:1214027..1214051 (25 bp)
AACACCTACAGACACATCTTGAATT
LOC_Os03g03034
Os.10510.1.S1_at--720--5872Chr03:1213921..1213945 (25 bp)
GAGCCCGACTTATTGTTTTGTGAGA
LOC_Os03g03034
Os.10510.1.S1_at--1022--6931Chr03:1213877..1213901 (25 bp)
GTAGTTTCTCGGTTGAAGTTGTTTG
LOC_Os03g03034
Target Sequence 
GGTGATCAGCTACAGGCGCTAAGCAACGGAAGATACAAGAGCGTGTGGCACCGTGCTGTCGTCAACTCTGACAAAGCGAG
GATGTCCGTCGCATCGTTCCTGTGCCCCTGCAACGACGTGCTCATCGGCCCAGCTCAGAAGCTCATCACCGATGGCTCCC
CGGCCGTCTACCGGAACTACACCTACGACGAGTACTACAAGAAGTTCTGGAGCAGAAACCTCGACCAAGAACACTGCTTG
GAGCTCTTCAGAACAACACCTACAGACACATCTTGAATTCTTGATCTAGTCGAGAACTGGTTTGTAGTACTCGGTTGTAG
GTGTAGGTGGTGTTTGGGAGAGGGGGTGGTGTTTGGGAGAGAGCCCGACTTATTGTTTTGTGAGAGGATCTCCCNAAACA
CCCCCGTAGTTTCTCGGTTGAAGTTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis