Browse Element(s) Details


OsAffx.12716.1.S1_at

Description tigr:9631.m00212
TID=OsAffx.12716.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0301011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02970Os.13488.1.S1_at5/113+1174351..1183184DEAD/DEAH box helicase carpel factory, putative, expressed
LOC_Os03g02980Os.18211.1.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_x_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g03000OsAffx.3120.1.S1_at11/113+1205217..1206205Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g03010OsAffx.12716.1.S1_at11/113+1208153..1208697expressed protein
LOC_Os03g03020Os.1148.1.S1_at11/113+1210568..121280950S ribosomal protein L11, chloroplast precursor, putative, expressed
LOC_Os03g03034Os.53217.1.S1_x_at11/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.10510.1.S1_at10/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.43567.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.38172.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.9332.2.S1_x_at2/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.56310.1.A1_s_at1/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12716.1.S1_at--684--10471Chr03:1208351..1208375 (25 bp)
TTACAGAGCGTACAAGGATAGGATC
LOC_Os03g03010
OsAffx.12716.1.S1_at--183--2231Chr03:1208340..1208364 (25 bp)
ACAAGGATAGGATCGCCTGTCGAGA
LOC_Os03g03010
OsAffx.12716.1.S1_at--420--10091Chr03:1208333..1208357 (25 bp)
TAGGATCGCCTGTCGAGAACATCTC
LOC_Os03g03010
OsAffx.12716.1.S1_at--1033--7211Chr03:1208322..1208346 (25 bp)
GTCGAGAACATCTCGTCGCGTCGCT
LOC_Os03g03010
OsAffx.12716.1.S1_at--498--9411Chr03:1208310..1208334 (25 bp)
TCGTCGCGTCGCTCATGCAATGCAA
LOC_Os03g03010
OsAffx.12716.1.S1_at--1004--4131Chr03:1208306..1208330 (25 bp)
CGCGTCGCTCATGCAATGCAAGCAA
LOC_Os03g03010
OsAffx.12716.1.S1_at--47--3251Chr03:1208284..1208308 (25 bp)
CAAGCTCAAGGCGAGAAAGGTGCAA
LOC_Os03g03010
OsAffx.12716.1.S1_at--709--2311Chr03:1208273..1208293 (21 bp)
AAAGGTGCAAATGAACAACAGCTAC
LOC_Os03g03010
OsAffx.12716.1.S1_at--772--671Chr03:1208205..1208283 (25 bp)
ATGAACAACAGCTACACACTACTCT
LOC_Os03g03010
OsAffx.12716.1.S1_at--257--1571Chr03:1208196..1208220 (25 bp)
AGCTACACACTACTCTGCACTTTTA
LOC_Os03g03010
OsAffx.12716.1.S1_at--834--2171Chr03:1208190..1208214 (25 bp)
ACACTACTCTGCACTTTTACACTCT
LOC_Os03g03010
Target Sequence 
TTACAGAGCGTACAAGGATAGGATCGCCTGTCGAGAACATCTCGTCGCGTCGCTCATGCAATGCAAGCAAGCTCAAGGCG
AGAAAGGTGCAAATGAACAACAGCTACACACTACTCTGCACTTTTACACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis