Browse Element(s) Details


Os.13488.1.S1_at

Description gb:CB672713
DB_XREF= gi:29676438
DB_XREF=OSJNEe06O03.r
CLONE=OSJNEe06O03
TID=Os.13488.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.13488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative CAF protein (OJ1705B08.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g029705/11DEAD/DEAH box helicase carpel factory, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02920Os.49618.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed
LOC_Os03g02920Os.7832.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed
LOC_Os03g02960Os.9074.1.S1_s_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.1.S1_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.2.S1_x_at3/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02970Os.13488.1.S1_at5/113+1174351..1183184DEAD/DEAH box helicase carpel factory, putative, expressed
LOC_Os03g02980Os.18211.1.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_x_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g03000OsAffx.3120.1.S1_at11/113+1205217..1206205Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g03010OsAffx.12716.1.S1_at11/113+1208153..1208697expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006396biological_processRNA processing
GO:0009880biological_processembryonic pattern specification
GO:0009908biological_processflower development
GO:0010050biological_processvegetative phase change
GO:0010098biological_processsuspensor development
GO:0010228biological_processvegetative to reproductive phase transition
GO:0030422biological_processRNA interference, production of siRNA
GO:0031053biological_processprimary microRNA processing
GO:0035279biological_processmiRNA-mediated gene silencing, mRNA cleavage
GO:0005634cellular_componentnucleus
GO:0003723molecular_functionRNA binding
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0004525molecular_functionribonuclease III activity
GO:0005515molecular_functionprotein binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13488.1.S1_at--611--4391Chr03:1174546..1174570 (25 bp)
GCCAATGCCTCAGTACAGGTGCGTA
LOC_Os03g02970
Os.13488.1.S1_at--126--4291Chr03:1174509..1174533 (25 bp)
CCTGCCCATGCTAAAAGATTCGTCT
LOC_Os03g02970
Os.13488.1.S1_at--817--1251Chr03:1174494..1174518 (25 bp)
AGATTCGTCTATTCGGTGAGGGTGA
LOC_Os03g02970
Os.13488.1.S1_at--1018--2931Chr03:1174410..1174434 (25 bp)
AAGGCTAAAGACTCTGCTGCAGTTC
LOC_Os03g02970
Os.13488.1.S1_at--430--10031Chr03:1174366..1174390 (25 bp)
TAGAGATTTCCCTGACAAGCCTGAC
LOC_Os03g02970
Os.13488.1.S1_at--951--5071Chr03:1174336..1174360 (25 bp)
GCAGCCGTAGGCACTGTGGTTGTTA
NONE
Os.13488.1.S1_at--327--6791Chr03:1174282..1174306 (25 bp)
GTTAGGCATTCAGCATTCTTACACA
NONE
Os.13488.1.S1_at--797--131Chr03:1174249..1174273 (25 bp)
ATTAATTACCCATTCAGTGCTCCTC
NONE
Os.13488.1.S1_at--399--1131Chr03:1174234..1174258 (25 bp)
AGTGCTCCTCAGCTTTGGCTAATAA
NONE
Os.13488.1.S1_at--721--7931Chr03:1174177..1174201 (25 bp)
GGATTATTTTTACCTGCGCTGGCGA
NONE
Os.13488.1.S1_at--110--7571Chr03:1174080..1174104 (25 bp)
GGGCCTCATAATTCTGTCGTGCAAT
NONE
Target Sequence 
GCCAATGCCTCAGTACAGGTGCGTAAACGAGGNTGNCCCTGCCCATGCTAAAAGATTCGTCTATTCGGTGAGGGTGAACA
CTTNTGATCGTGGATGGACGGATGAATGCATTGGAGAGCCNATGCNTAGTGTGAAGAAGGCTAAAGACTCTGCTGCAGTT
CTTCTCCTCGAGCTTCTGAATAGAGATTTCCCTGACAAGCCTGACGGTAAGCAGCCGTAGGCACTGTGGTTGTTATTGGT
GGTGGCATTGTGGGCATTTGTGGTGTTAGGCATTCAGCATTCTTACACAAACACAAAATTAATTACCCATTCAGTGCTCC
TCAGCTTTGGCTAATAAGGACATAACCAGAGCTGGTGAGTGAGAGTAGAGGATTATTTTTACCTGCGCTGGCGATTATAG
TGGTGAGATGTGATAAATAGGAGCCGCGATAGAAAAAGGATAGCTTGATAGCATAGGATAGGCGCGGGGCCTCATAATTC
TGTCGTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis