Browse Element(s) Details


Os.49618.1.S1_at

Description gb:AK120013.1
DB_XREF= gi:37989636
TID=Os.49618.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-186-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-B02, full insert sequence.
FL= gb:AK120013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0292011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02900Os.31989.1.S1_at11/113+1131263..1133042B3 DNA binding domain containing protein, expressed
LOC_Os03g02910OsAffx.22285.1.S1_at11/113+1146350..1146775hypothetical protein
LOC_Os03g02920Os.49618.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed
LOC_Os03g02920Os.7832.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed
LOC_Os03g02960Os.9074.1.S1_s_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.1.S1_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.2.S1_x_at3/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02970Os.13488.1.S1_at5/113+1174351..1183184DEAD/DEAH box helicase carpel factory, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49618.1.S1_at--823--7651Chr03:1152675..1152699 (25 bp)
GGGATCATGGCACTTGGCACACTAA
LOC_Os03g02920
Os.49618.1.S1_at--66--7751Chr03:1152599..1152623 (25 bp)
GGTGTGATGGGCCAACTCCAATCAT
LOC_Os03g02920
Os.49618.1.S1_at--142--91Chr03:1152576..1152600 (25 bp)
ATTCCTAATCTAGCTTTGCTCCGAT
LOC_Os03g02920
Os.49618.1.S1_at--687--9091Chr03:1152560..1152584 (25 bp)
TGCTCCGATCTCCATGCAAACAAAT
LOC_Os03g02920
Os.49618.1.S1_at--730--3031Chr03:1152538..1152562 (25 bp)
AATCGTAAACTGTATCGCCATGCAA
LOC_Os03g02920
Os.49618.1.S1_at--541--6911Chr03:1152527..1152551 (25 bp)
GTATCGCCATGCAATTCAGTGTAGA
LOC_Os03g02920
Os.49618.1.S1_at--213--6551Chr03:1152413..1152437 (25 bp)
GATTATTACTGACGCCACAACGGTA
LOC_Os03g02920
Os.49618.1.S1_at--315--3591Chr03:1152308..1152332 (25 bp)
CATTACTGATCATACGACCGTTGCA
LOC_Os03g02920
Os.49618.1.S1_at--265--5831Chr03:1152293..1152317 (25 bp)
GACCGTTGCAGTTTCATATTGTTCA
LOC_Os03g02920
Os.49618.1.S1_at--730--7091Chr03:1152245..1152269 (25 bp)
GTCAAAGATTCCTCACTAGTGGTAA
LOC_Os03g02920
Os.49618.1.S1_at--502--9871Chr03:1152208..1152232 (25 bp)
TACAGTATATACCACCACGTCAATA
LOC_Os03g02920
Target Sequence 
GGGATCATGGCACTTGGCACACTAATAAAGTTCACTTTAACCCTCTGGGGGTGATGAACAGTTATTTTAGGAGGCTGGTG
TGATGGGCCAACTCCAATCATTCCTAATCTAGCTTTGCTCCGATCTCCATGCAAACAAATCGTAAACTGTATCGCCATGC
AATTCAGTGTAGAAGGAAGTTGAGACATCGATCGGAGCAAAATTATGGAGTACTAGTACTAGTACGTTCGTATGATTATA
TTGATTCAGTTGGACTAAATTTGATTATTACTGACGCCACAACGGTAAAGTAGGAGCATTACGACATGATATATACGGTC
AGCAGGTTTAGAACCATTTTTTGTGTTACATGTGTTTTTTAAATGAACATTACTGATCATACGACCGTTGCAGTTTCATA
TTGTTCAAGTTGACATATTCTGAACAAGTAGTCAAAGATTCCTCACTAGTGGTAAGTCAATGGAGTATACAGTATATACC
ACCACGTCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis