Browse Element(s) Details


OsAffx.22285.1.S1_at

Description tigr:9631.m00202
TID=OsAffx.22285.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0291011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02900Os.31989.1.S1_at11/113+1131263..1133042B3 DNA binding domain containing protein, expressed
LOC_Os03g02910OsAffx.22285.1.S1_at11/113+1146350..1146775hypothetical protein
LOC_Os03g02920Os.49618.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed
LOC_Os03g02920Os.7832.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22285.1.S1_at--66--8451Chr03:1146690..1146714 (25 bp)
GGCCAGAGAGCATTGCGTCGAGACC
LOC_Os03g02910
OsAffx.22285.1.S1_at--568--1351Chr03:1146686..1146710 (25 bp)
AGAGAGCATTGCGTCGAGACCAGGA
LOC_Os03g02910
OsAffx.22285.1.S1_at--658--3591Chr03:1146680..1146704 (25 bp)
CATTGCGTCGAGACCAGGAGGAGAA
LOC_Os03g02910
OsAffx.22285.1.S1_at--940--7511Chr03:1146643..1146667 (25 bp)
GTGGATGGAGGCGTCACTGCCAACC
LOC_Os03g02910
OsAffx.22285.1.S1_at--812--7091Chr03:1146631..1146655 (25 bp)
GTCACTGCCAACCAAGGGTTCGATG
LOC_Os03g02910
OsAffx.22285.1.S1_at--141--2631Chr03:1146412..1146646 (25 bp)
AACCAAGGGTTCGATGTGCCGATTT
LOC_Os03g02910
OsAffx.22285.1.S1_at--243--2891Chr03:1146408..1146642 (25 bp)
AAGGGTTCGATGTGCCGATTTTGGA
LOC_Os03g02910
OsAffx.22285.1.S1_at--97--4511Chr03:1146395..1146419 (25 bp)
GCCGATTTTGGAACTGGCACCTATA
LOC_Os03g02910
OsAffx.22285.1.S1_at--856--8791Chr03:1146390..1146414 (25 bp)
TTTTGGAACTGGCACCTATACGGTT
LOC_Os03g02910
OsAffx.22285.1.S1_at--565--8171Chr03:1146386..1146410 (25 bp)
GGAACTGGCACCTATACGGTTGAGA
LOC_Os03g02910
OsAffx.22285.1.S1_at--423--3911Chr03:1146382..1146406 (25 bp)
CTGGCACCTATACGGTTGAGAATAG
LOC_Os03g02910
Target Sequence
GGCCAGAGAGCATTGCGTCGAGACCAGGAGGAGAACGCAGCGGTGAGGTGGATGGAGGCGTCACTGCCAACCAAGGGTTC
GATGTGCCGATTTTGGAACTGGCACCTATACGGTTGAGAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis