Browse Element(s) Details


Os.31989.1.S1_at

Description gb:AK106367.1
DB_XREF= gi:32991576
TID=Os.31989.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative RAV-like B3 domain DNA binding protein (OJ1705B08.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-B12, full insert sequence.
FL= gb:AK106367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0290011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02870NANA3+1110205..1111709hypothetical protein
LOC_Os03g02890Os.54021.1.S1_at11/113+1115474..1119407expressed protein
LOC_Os03g02900Os.31989.1.S1_at11/113+1131263..1133042B3 DNA binding domain containing protein, expressed
LOC_Os03g02910OsAffx.22285.1.S1_at11/113+1146350..1146775hypothetical protein
LOC_Os03g02920Os.49618.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed
LOC_Os03g02920Os.7832.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31989.1.S1_at--304--5731Chr03:1132530..1132554 (25 bp)
GACTGCGCGAATTCCGAACAAGACC
LOC_Os03g02900
Os.31989.1.S1_at--1103--9271Chr03:1132623..1132647 (25 bp)
TCCGGGAAAGCGAGGTGCTCCTTGA
LOC_Os03g02900
Os.31989.1.S1_at--994--9071Chr03:1132638..1132662 (25 bp)
TGCTCCTTGAACCTTGACTTGTGAA
LOC_Os03g02900
Os.31989.1.S1_at--11--6131Chr03:1132663..1132687 (25 bp)
GAGGGTACGGCCGTACACGTACACG
LOC_Os03g02900
Os.31989.1.S1_at--338--1891Chr03:1132679..1132703 (25 bp)
ACGTACACGATCTCTGCTACTTTAT
LOC_Os03g02900
Os.31989.1.S1_at--482--4851Chr03:1132694..1132718 (25 bp)
GCTACTTTATGCTTCAATTCTGCTA
LOC_Os03g02900
Os.31989.1.S1_at--592--3151Chr03:1132709..1132733 (25 bp)
AATTCTGCTACTACGTACTGACACA
LOC_Os03g02900
Os.31989.1.S1_at--283--3711Chr03:1132838..1132862 (25 bp)
CTAGCGCCTTCGTATTTCGTATATA
LOC_Os03g02900
Os.31989.1.S1_at--431--10771Chr03:1132964..1132988 (25 bp)
TTGATGGTTTTTTCTTGCTTCGATT
LOC_Os03g02900
Os.31989.1.S1_at--736--9051Chr03:1132979..1133003 (25 bp)
TGCTTCGATTTGCTTTGCCTTTTTC
LOC_Os03g02900
Os.31989.1.S1_at--403--9192Chr03:1132994..1133018 (25 bp)
TGCCTTTTTCTCTTGTGCTTAATTA
LOC_Os03g02900
Target Sequence 
GACTGCGCGAATTCCGAACAAGACCACGCCGGCGTGGTCGGGAAGACGGCGCCGCCGCCGCTGCCATCGCCGCCGTCATC
ATCGTCATCTTCCTCCGGGAAAGCGAGGTGCTCCTTGAACCTTGACTTGTGAAGAGGGTACGGCCGTACACGTACACGAT
CTCTGCTACTTTATGCTTCAATTCTGCTACTACGTACTGACACAAATGGAAATCGTCGACGAAGAGTGTGACCGGAGAAG
TAAACAAAGGCGGCGATGGCGGCGCGCAGCGGCGGCGGTGGCGGCGGAGGTGGAGGCGCTTGGAGCATCTAGCGCCTTCG
TATTTCGTATATAGCTCATCATCTCTCTTAAATTAGTCAGTGCAGTGTGAGGGGGAACAGTTTAAGAAAAAAGAACGAAG
CAGCAACGTACCCAAAAAAAATATTCTTTCTAGGTTGATGGTTTTTTCTTGCTTCGATTTGCTTTGCCTTTTTCTCTTGT
GCTTAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis