Browse Element(s) Details


OsAffx.24947.1.S1_at

Description tigr:9631.m00207
TID=OsAffx.24947.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NAC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0296011/11Nascent polypeptide-associated complex alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02920Os.49618.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed
LOC_Os03g02920Os.7832.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed
LOC_Os03g02960Os.9074.1.S1_s_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.1.S1_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.2.S1_x_at3/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02970Os.13488.1.S1_at5/113+1174351..1183184DEAD/DEAH box helicase carpel factory, putative, expressed
LOC_Os03g02980Os.18211.1.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_x_at11/113+1190026..1196205Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24947.1.S1_at--415--1471Chr03:1174288..1174312 (25 bp)
AGAATGCTGAATGCCTAACACCACA
LOC_Os03g02960
OsAffx.24947.1.S1_at--164--1531Chr03:1174417..1174441 (25 bp)
AGCAGAGTCTTTAGCCTTCTTCACA
LOC_Os03g02960
OsAffx.24947.1.S1_at--543--10511Chr03:1174436..1174460 (25 bp)
TTCACACTAGGCATTGGCTCTCCAA
LOC_Os03g02960
OsAffx.24947.1.S1_at--360--8791Chr03:1174491..1174515 (25 bp)
TGTTCACCCTCACCGAATAGACGAA
LOC_Os03g02960
OsAffx.24947.1.S1_at--372--5252Chr12:3220321..3220343 (22 bp)
GAATCTTTTAGCATGGGCAGGGCCA
NONE
OsAffx.24947.1.S1_at--534--6811Chr03:1174543..1174567 (25 bp)
GTTTACGCACCTGTACTGAGGCATT
LOC_Os03g02960
OsAffx.24947.1.S1_at--142--4451Chr03:1174575..1174599 (25 bp)
GCCTTCTCAAGCAGATGTCGTTCAG
LOC_Os03g02960
OsAffx.24947.1.S1_at--333--5491Chr03:1174612..1174636 (25 bp)
GAACATCTGAGCACCATTTTTCTTC
LOC_Os03g02960
OsAffx.24947.1.S1_at--956--10591Chr03:1174676..1174700 (25 bp)
TTCTCCTTCAGGACCACAAGTGCAT
LOC_Os03g02960
OsAffx.24947.1.S1_at--533--9191Chr03:1174720..1174744 (25 bp)
TGCCATCTTCTTCTGAGGGTTCTGA
LOC_Os03g02960
OsAffx.24947.1.S1_at--1130--7671Chr03:1174736..1174760 (25 bp)
GGGTTCTGAGCTACACCGATCTGAA
LOC_Os03g02960
Target Sequence 
AGAATGCTGAATGCCTAACACCACAAATGCCCACAATGCCACCACCAATAACAACCACAGTGCCTACGGCTGCTTACCGT
CAGGCTTGTCAGGGAAATCTCTATTCAGAAGCTCGAGGAGAAGAACTGCAGCAGAGTCTTTAGCCTTCTTCACACTAGGC
ATTGGCTCTCCAATGCATTCATCCGTCCATCCACGATCAGAAGTGTTCACCCTCACCGAATAGACGAATCTTTTAGCATG
GGCAGGGCCACCCTCGTTTACGCACCTGTACTGAGGCATTGGCCACTGCCTTCTCAAGCAGATGTCGTTCAGGGTCTGCC
TGGTGAACATCTGAGCACCATTTTTCTTCTCGCCATCCCTTTCATCTTCTTTCTTTGTTGCGGTTTCCTTCTCCTTCAGG
ACCACAAGTGCATTCCTCGCTGCCAACTTCTGTGCCATCTTCTTCTGAGGGTTCTGAGCTACACCGATCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis