Browse Element(s) Details


Os.9074.1.S1_s_at

Description gb:AK059982.1
DB_XREF= gi:32970000
TID=Os.9074.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative nascent polypeptide associated complex alpha chain (OJ1705B08.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E10, full insert sequence.
FL= gb:AK059982.1 gb:AK099300.1 gb:AY224519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0296011/11Nascent polypeptide-associated complex alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02920Os.49618.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed
LOC_Os03g02920Os.7832.1.S1_at11/113+1150595..1154510Peroxidase family protein, expressed
LOC_Os03g02960Os.9074.1.S1_s_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.1.S1_at11/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02960OsAffx.24947.2.S1_x_at3/113+1172639..1174803Nascent polypeptide-associated complex alpha subunit, putative, expressed
LOC_Os03g02970Os.13488.1.S1_at5/113+1174351..1183184DEAD/DEAH box helicase carpel factory, putative, expressed
LOC_Os03g02980Os.18211.1.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_x_at11/113+1190026..1196205Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9074.1.S1_s_at--943--4591Chr03:1173723..1173747 (25 bp)
GCGACATTGTGAGCGCCATCATGGA
LOC_Os03g02960
Os.9074.1.S1_s_at--222--4331Chr03:1173738..1173762 (25 bp)
CCATCATGGAGCTCACGGCCTGAAG
LOC_Os03g02960
Os.9074.1.S1_s_at--461--8011Chr03:1173828..1173852 (25 bp)
GGCGTTTCGTCGTGGGTTTGCATAA
LOC_Os03g02960
Os.9074.1.S1_s_at--305--9791Chr03:1173850..1173874 (25 bp)
TAAGATGCCCTGTTTGTTCAGCTGC
LOC_Os03g02960
Os.9074.1.S1_s_at--754--6751Chr03:1173865..1173889 (25 bp)
GTTCAGCTGCTGGACTTTGCATCAA
LOC_Os03g02960
Os.9074.1.S1_s_at--617--2391Chr03:1173888..1173912 (25 bp)
AAACTTTTCATAGCATGTTCCCATA
LOC_Os03g02960
Os.9074.1.S1_s_at--162--8811Chr03:1173903..1173927 (25 bp)
TGTTCCCATATTAGTGTCATCTTAA
LOC_Os03g02960
Os.9074.1.S1_s_at--937--1391Chr03:1173939..1173963 (25 bp)
AGACTTGTTTGAACGGCAACACCAA
LOC_Os03g02960
Os.9074.1.S1_s_at--721--6751Chr03:1174006..1174030 (25 bp)
GTTCACCAAATCCATAGCATGCCAG
LOC_Os03g02960
Os.9074.1.S1_s_at--909--1511Chr03:1174021..1174045 (25 bp)
AGCATGCCAGCGCAATGGTAATATA
LOC_Os03g02960
Os.9074.1.S1_s_at--816--10771Chr03:1174065..1174089 (25 bp)
TTGTTTTGTTTACACATTGCACGAC
LOC_Os03g02960
Target Sequence 
GCGACATTGTGAGCGCCATCATGGAGCTCACGGCCTGAAGCCCCCTCCTGCTGCTGCATTGGCACCACCTCTCTTCCCCC
ATNTCAGTATCGTGTTTTTTTNTATGGCGTTTCGTCGTGGGTTTGCATAAGATGCCCTGTTTGTTCAGCTGCTGGACTTT
GCATCAAACTTTTCATAGCATGTTCCCATATTAGTGTCATCTTAAATGGAGTTTTCAGACTTGTTTGAACGGCAACACCA
ATAGAGTTCGATANTTTGAGTCAATTAAGAGGAGAAATAAGATGTTCACCAAATCCATAGCATGCCAGCGCAATGGTAAT
ATAAATTTATTGGATTAATGCATTGTTTTGTTTACACATTGCACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9074.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis