Browse Element(s) Details


Os.23586.1.S1_at

Description gb:AK110667.1
DB_XREF= gi:32995876
TID=Os.23586.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-F09, full insert sequence.
FL= gb:AK110667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4383011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43760Os.38172.1.S1_x_at6/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.43567.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.53217.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43770OsAffx.32181.1.S1_at11/1112+27154482..27155870F-box domain containing protein
LOC_Os12g43780Os.25475.1.S1_at11/1112+27157385..27158406expressed protein
LOC_Os12g43790NANA12+27163743..27164249bZIP transcription factor family protein, expressed
LOC_Os12g43810Os.52999.1.S1_at11/1112+27171897..27172508expressed protein
LOC_Os12g43820OsAffx.20109.1.S1_at11/1112+27175674..27176105expressed protein
LOC_Os12g43830Os.23586.1.S1_at11/1112+27176739..27179569expressed protein
LOC_Os12g43840Os.54809.1.S1_at11/1112+27179922..27185459TPR Domain containing protein, expressed
LOC_Os12g43850Os.54634.1.S1_at11/1112+27186781..27191737retrotransposon protein, putative, unclassified
LOC_Os12g43860Os.40360.1.S1_x_at1/1112+27200181..27200807hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23586.1.S1_at--143--10011Chr12:27178138..27178162 (25 bp)
TAGCATAGTTTCTCAGGAGTCTTCT
LOC_Os12g43830
Os.23586.1.S1_at--121--9092Chr11:2945106..2945128 (22 bp)
TGCTCAACTCACTCTATCATCTAAT
NONE
Os.23586.1.S1_at--144--4771Chr12:27177308..27177332 (25 bp)
GCTGCAGTTGTCTACCTGTCTAGAT
LOC_Os12g43830
Os.23586.1.S1_at--854--991Chr12:27177158..27177182 (25 bp)
AGGATCCCCGCCGATAATTTATGAG
LOC_Os12g43830
Os.23586.1.S1_at--876--7711Chr12:27177062..27177086 (25 bp)
GGGTGTTACTGATGCTTCTGAGCAT
LOC_Os12g43830
Os.23586.1.S1_at--121--6331Chr12:27177009..27177033 (25 bp)
GATGAATCGATACCTGATGAGCTCT
LOC_Os12g43830
Os.23586.1.S1_at--395--6311Chr12:27176994..27177018 (25 bp)
GATGAGCTCTTGATCTTCGTGATGA
LOC_Os12g43830
Os.23586.1.S1_at--174--6311Chr12:27176885..27176909 (25 bp)
GATGAGTTGCGAGTTGCCTTCAATT
LOC_Os12g43830
Os.23586.1.S1_at--1117--6051Chr12:27176875..27176899 (25 bp)
GAGTTGCCTTCAATTCTTTGTGAGC
LOC_Os12g43830
Os.23586.1.S1_at--859--2971Chr12:27176836..27176860 (25 bp)
AATGGGTAACTCAGTCTTGCCTGCA
LOC_Os12g43830
Os.23586.1.S1_at--1095--7131Chr12:27176823..27176847 (25 bp)
GTCTTGCCTGCACTTGTGAAACACA
LOC_Os12g43830
Target Sequence 
TAGCATAGTTTCTCAGGAGTCTTCTCTGCTTCTGCTCAACTCACTCTATCATCTAATTGATGCAAGAACATCGACCNTTC
AAATCATCGCTGCAGTTGTCTACCTGTCTAGATTATCTTTTCAGTGAGATTGACGATGATGGATCCGGAGAGGAAGAAGG
ATCCCCGCCGATAATTTATGAGGACAAGGATACTGATGATGAAGAGTCTGAAGTTGATGATATGGAAACCAGTGGGGAGG
GTGAAGATCTGGGGGGTGTTACTGATGCTTCTGAGCATTCAGATGGAAGTGAGGTNATGAGCGACTGATGAATCGATACC
TGATGAGCTCTTGATCTTCGTGATGAGAGTTGGAGTTGTGAGTTAACCTCATGATGGGCAGAAGAAGTCGATAGGATAGT
TTCTGAACACTTTTCACATTGATTTTTTCTGATGAGTTGCGAGTTGCCTTCAATTCTTTGTGAGCATGTTGTTGGAATTA
ATGGGTAACTCAGTCTTGCCTGCACTTGTGAAACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis