Browse Element(s) Details


OsAffx.32181.1.S1_at

Description tigr:9640.m04313
TID=OsAffx.32181.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4377011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43730OsAffx.7882.1.S1_x_at1/1112+27128865..27132954expressed protein
LOC_Os12g43740NANA12+27135120..27136028oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g43750Os.55110.1.S1_at11/1112+27139430..27140307expressed protein
LOC_Os12g43760Os.38172.1.S1_x_at6/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.43567.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.53217.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43770OsAffx.32181.1.S1_at11/1112+27154482..27155870F-box domain containing protein
LOC_Os12g43780Os.25475.1.S1_at11/1112+27157385..27158406expressed protein
LOC_Os12g43790NANA12+27163743..27164249bZIP transcription factor family protein, expressed
LOC_Os12g43810Os.52999.1.S1_at11/1112+27171897..27172508expressed protein
LOC_Os12g43820OsAffx.20109.1.S1_at11/1112+27175674..27176105expressed protein
LOC_Os12g43830Os.23586.1.S1_at11/1112+27176739..27179569expressed protein
LOC_Os12g43840Os.54809.1.S1_at11/1112+27179922..27185459TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32181.1.S1_at--597--231Chr12:27155275..27155299 (25 bp)
ATATTACTGTCGATCCTTACTTAGG
LOC_Os12g43770
OsAffx.32181.1.S1_at--254--3811Chr12:27155349..27155373 (25 bp)
CTCCAAATTTGGTTCCTCAAGGAAT
LOC_Os12g43770
OsAffx.32181.1.S1_at--699--5211Chr12:27155399..27155423 (25 bp)
GAATTCATACTGTGGTGGCATCAAT
LOC_Os12g43770
OsAffx.32181.1.S1_at--124--2711Chr12:27155481..27155505 (25 bp)
AAGCATGACGCAGACCTAGGGCCAG
LOC_Os12g43770
OsAffx.32181.1.S1_at--984--10071Chr12:27155497..27155521 (25 bp)
TAGGGCCAGTGCTAGCAGCAGGCTA
LOC_Os12g43770
OsAffx.32181.1.S1_at--53--1511Chr12:27155513..27155537 (25 bp)
AGCAGGCTACACTCTCAACGACGGT
LOC_Os12g43770
OsAffx.32181.1.S1_at--896--2591Chr12:27155529..27155553 (25 bp)
AACGACGGTGGCCAGCAATGGATAT
LOC_Os12g43770
OsAffx.32181.1.S1_at--1137--6031Chr12:27155709..27155733 (25 bp)
GAGATCGTTTTCTTGTACGACACAG
LOC_Os12g43770
OsAffx.32181.1.S1_at--523--1411Chr12:27155732..27155756 (25 bp)
AGACACTAGAGTGGTAGCCTACCAT
LOC_Os12g43770
OsAffx.32181.1.S1_at--9--7891Chr12:27155771..27155795 (25 bp)
GGTTCAAGACTTGGGCGTACTACAA
LOC_Os12g43770
OsAffx.32181.1.S1_at--921--7811Chr12:27155815..27155839 (25 bp)
GGTCATTTTCATACACTCCTTGTTG
LOC_Os12g43770
Target Sequence 
ATATTACTGTCGATCCTTACTTAGGAAAATCCCAAGAGGGAGTGTACTATGCATTGGTTATTGGTTTATGTCGACTCCAA
ATTTGGTTCCTCAAGGAATATCAATCATCATATTCTTCTTATTCGAATTCATACTGTGGTGGCATCAATGGCGACGGCGG
TGGCATGGAGACGACGACGATGGATCATGAGCACGAGTGGGTGCTCAAGCATGACGCAGACCTAGGGCCAGTGCTAGCAG
CAGGCTACACTCTCAACGACGGTGGCCAGCAATGGATATGGCATAACATTGACACCAAAAAGAAAAACAAGGAATCACTA
GTAAAGGAAGAGGAATTCGAATGGAACGACTCTGATGATGAAAATGGTAGCGCCGGTGAAGATAGGCAGTACAAAGGATA
CATCTCTCAAGTATTTGGATTTCATCCTTTCAAAGAGATCGTTTTCTTGTACGACACAGACACTAGAGTGGTAGCCTACC
ATTATAATAGATCAAAGGTTCAAGACTTGGGCGTACTACAAGTACGTGAACGAGTGTCAAGGTCATTTTCATACACTCCT
TGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis