Browse Element(s) Details


OsAffx.7882.1.S1_x_at

Description tigr:9640.m04309
TID=OsAffx.7882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g293503/11myosin, putative, expressed
LOC_Os12g437301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29320OsAffx.25367.1.S1_at2/116+16745314..16750068retrotransposon, putative, centromere-specific
LOC_Os06g29330Os.40855.2.S1_x_at6/116+16756583..16757485hypothetical protein
LOC_Os06g29330Os.40855.4.S1_x_at4/116+16756583..16757485hypothetical protein
LOC_Os06g29330Os.40855.4.S1_at1/116+16756583..16757485hypothetical protein
LOC_Os06g29340OsAffx.4960.1.S1_at10/116+16763030..16769687Protein kinase domain containing protein, expressed
LOC_Os06g29350Os.50335.1.S1_at11/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350OsAffx.7882.1.S1_at6/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350OsAffx.7882.1.S1_x_at3/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350Os.50543.1.S1_x_at1/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29360NANA6+16784964..16786115hypothetical protein
LOC_Os06g29370OsAffx.15660.1.S1_at10/116+16790222..16792143hypothetical protein
LOC_Os06g29380Os.22732.1.A1_at11/116+16792654..16798778Phospholipid-transporting ATPase 9, putative, expressed
LOC_Os06g29390OsAffx.15661.1.S1_at11/116+16809193..16809438hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0005777cellular_componentperoxisome
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7882.1.S1_x_at--378--2591Chr12:27132299..27132323 (25 bp)
AACGACGCTGTTGCCTTTCGTCAAC
LOC_Os12g43730
OsAffx.7882.1.S1_x_at--17--6172Chr12:27133117..27133141 (25 bp)
GAGGATTACAATGTTTCTGCATATA
NONE
OsAffx.7882.1.S1_x_at--662--10591Chr12:27133131..27133269 (25 bp)
TTCTGCATATATAGGTTCTCATGTT
NONE
OsAffx.7882.1.S1_x_at--282--10251Chr12:27133268..27133292 (25 bp)
TTTGGGCTGAAGACCCTGAACTTGC
NONE
OsAffx.7882.1.S1_x_at--788--3851Chr12:27133283..27133307 (25 bp)
CTGAACTTGCCTGGGTCGATGGAGA
NONE
OsAffx.7882.1.S1_x_at--26--6231Chr12:27133330..27133354 (25 bp)
GAGGCCAAGATCCAAGCAACCAATG
NONE
OsAffx.7882.1.S1_x_at--473--272Chr12:27133544..27133568 (25 bp)
ATATGTTATTCTGCATGGCCATTTA
NONE
OsAffx.7882.1.S1_x_at--447--8452Chr12:27133559..27133641 (25 bp)
TGGCCATTTACTACATATACGGGAA
NONE
OsAffx.7882.1.S1_x_at--107--7631Chr12:27133637..27133661 (25 bp)
GGGAAACATTCTCATTGCCGTCAAT
NONE
OsAffx.7882.1.S1_x_at--395--10691Chr12:27133651..27133675 (25 bp)
TTGCCGTCAATCCTTTCCAAAGATT
NONE
OsAffx.7882.1.S1_x_at--1075--2851Chr12:27133736..27133760 (25 bp)
AAGTCCACATGTTTCGCTATGGCAG
NONE
Target Sequence 
AACGACGCTGTTGCCTTTCGTCAACCCCCACTTCTCCTTCCCCGCCGCCGCCGCTCGCCGCCCGCCCGCCCGCCCGCCAT
GGATGAGGAGTACGACGTGATCGTGCTGGGGACGGGCCTCATGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCC
TCAAGTTTATAGAGGATTACAATGTTTCTGCATATATAGGTTCTCATGTTTGGGCTGAAGACCCTGAACTTGCCTGGGTC
GATGGAGAAGTTGTTAAGATCAAAGGCGAAGAGGCCAAGATCCAAGCAACCAATGGAAAGAAGATCATTGCAGCTGCTGG
TGGAGTTGATGATATGACAAAGCTATCATACCTCCATGAACCAGGAGTTCTGCAGAATTTGGCAACCAGATATGAACTTA
ATGAAATATATATATGTTATTCTGCATGGCCATTTACTACATATACGGGAAACATTCTCATTGCCGTCAATCCTTTCCAA
AGATTGCCATATTTGTATGATCCACATATGATGCAACAGTACAAGGGAGCACCATTTGGAGAGTTAAGTCCACATGTTTC
GCTATGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7882.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis