Browse Element(s) Details


OsAffx.4960.1.S1_at

Description tigr:9634.m02811
TID=OsAffx.4960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2934010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29310Os.9907.1.S1_s_at11/116+16731929..16744664Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os06g29320OsAffx.25367.1.S1_at2/116+16745314..16750068retrotransposon, putative, centromere-specific
LOC_Os06g29330Os.40855.2.S1_x_at6/116+16756583..16757485hypothetical protein
LOC_Os06g29330Os.40855.4.S1_x_at4/116+16756583..16757485hypothetical protein
LOC_Os06g29330Os.40855.4.S1_at1/116+16756583..16757485hypothetical protein
LOC_Os06g29340OsAffx.4960.1.S1_at10/116+16763030..16769687Protein kinase domain containing protein, expressed
LOC_Os06g29350Os.50335.1.S1_at11/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350OsAffx.7882.1.S1_at6/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350OsAffx.7882.1.S1_x_at3/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350Os.50543.1.S1_x_at1/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29360NANA6+16784964..16786115hypothetical protein
LOC_Os06g29370OsAffx.15660.1.S1_at10/116+16790222..16792143hypothetical protein
LOC_Os06g29380Os.22732.1.A1_at11/116+16792654..16798778Phospholipid-transporting ATPase 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4960.1.S1_at--536--8931Chr06:16767804..16767828 (25 bp)
TGACCTCAGCAATGGTGTGCAGCCG
LOC_Os06g29340
OsAffx.4960.1.S1_at--225--2771Chr06:16767832..16767856 (25 bp)
AAGAGCCAGATGTTCAATGTCGCGA
LOC_Os06g29340
OsAffx.4960.1.S1_at--959--4411Chr06:16767899..16767923 (25 bp)
GCCAGGATTTCAGCTCGGAGTACAG
LOC_Os06g29340
OsAffx.4960.1.S1_at--75--7031NONE
GTACAGCCAATCCAGACGCCAGAAG
NONE
OsAffx.4960.1.S1_at--946--6151Chr06:16768406..16768430 (25 bp)
GAGGTATCTCTTGAACTGGTCGGCA
LOC_Os06g29340
OsAffx.4960.1.S1_at--697--1611Chr06:16768434..16768458 (25 bp)
AGCGTCAAGATCGTTGTCGGGTCAA
LOC_Os06g29340
OsAffx.4960.1.S1_at--800--751Chr06:16769252..16769276 (25 bp)
ATGTCACCAATGTCTCGACGCGTGT
LOC_Os06g29340
OsAffx.4960.1.S1_at--362--8491Chr06:16769386..16769410 (25 bp)
TGGCTCCCAAGTACGCATGGAAGCT
LOC_Os06g29340
OsAffx.4960.1.S1_at--945--3071Chr06:16769419..16769443 (25 bp)
AATCAGACATGTTCTCTTTCGGCGT
LOC_Os06g29340
OsAffx.4960.1.S1_at--132--2031Chr06:16769535..16769559 (25 bp)
ACTAGTGCCCCAAGTGACTGCAAAT
LOC_Os06g29340
OsAffx.4960.1.S1_at--288--271Chr06:16769608..16769632 (25 bp)
ATATGTTCTTCCTGACCATACTCAT
LOC_Os06g29340
Target Sequence 
TGACCTCAGCAATGGTGTGCAGCCGGGGAAGAGCCAGATGTTCAATGTCGCGAACACTGCCGACATCAGGCAGTTCCAAA
GAATGGCATTTGGCAGCCAGGATTTCAGCTCGGAGTACAGCCAATCCAGACGCCAGAAGGGGTTTCGTGAGGTATCTCTT
GAACTGGTCGGCAACGAGCGTCAAGATCGTTGTCGGGTCAATAGTCAGAGGTGTGTGGCACACTTTGGGCTTGCCAAGCT
GGCGAAGAACGATGTCACCAATGTCTCGACGCGTGTGATGGGTACATTTGGGTATTTGGCTCCCAAGTACGCATGGAAGC
TGGCCGAGAAATCAGACATGTTCTCTTTCGGCGTCGTTCTTATGGAGCTCATCACAGGTTGGAAGCCTGTCGACTCGTCC
CGTCCTCTCGGCAATGAGAGCCTTATCGAGTGGGAAAGCTCCAACACTAGTGCCCCAAGTGACTGCAAATATCTCCTCAG
AGATGCACAATTTTACCATGTGATGTTGGTGTTTGGTGATATGTTCTTCCTGACCATACTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis