Browse Element(s) Details

Os.9907.1.S1_s_at

Description

gb:AK064330.1
DB_XREF= gi:32974348
TID=Os.9907.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F11, full insert sequence.
FL= gb:AK064330.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g29310	11/11	Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g29270	OsAffx.940.1.S1_x_at	1/11	6	+	16705403..16712256	retrotransposon protein, putative, unclassified
LOC_Os06g29280	Os.46314.2.S1_x_at	4/11	6	+	16713281..16716479	retrotransposon protein, putative, unclassified
LOC_Os06g29290	NA	NA	6	+	16718411..16718803	pentatricopeptide, putative
LOC_Os06g29300	OsAffx.19542.3.S1_x_at	7/11	6	+	16718985..16726542	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29300	OsAffx.25502.2.S1_at	1/11	6	+	16718985..16726542	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29300	Os.4509.1.S1_x_at	1/11	6	+	16718985..16726542	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29310	Os.9907.1.S1_s_at	11/11	6	+	16731929..16744664	Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os06g29320	OsAffx.25367.1.S1_at	2/11	6	+	16745314..16750068	retrotransposon, putative, centromere-specific
LOC_Os06g29330	Os.40855.2.S1_x_at	6/11	6	+	16756583..16757485	hypothetical protein
LOC_Os06g29330	Os.40855.4.S1_x_at	4/11	6	+	16756583..16757485	hypothetical protein
LOC_Os06g29330	Os.40855.4.S1_at	1/11	6	+	16756583..16757485	hypothetical protein
LOC_Os06g29340	OsAffx.4960.1.S1_at	10/11	6	+	16763030..16769687	Protein kinase domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9907.1.S1_s_at--716--441	1	Chr06:16732464..16732488 (25 bp)	GCCACCTCATAGTTTGCAGGCGGCT	LOC_Os06g29310
Os.9907.1.S1_s_at--834--733	1	Chr06:16732403..16732427 (25 bp)	GTGCATCCGGAAAACATAGCTCTCA	LOC_Os06g29310
Os.9907.1.S1_s_at--476--873	1	Chr06:16732376..16732400 (25 bp)	TGTCTTCTCCGGTTATGCCACAAGA	LOC_Os06g29310
Os.9907.1.S1_s_at--262--999	1	Chr06:16732270..16732294 (25 bp)	TAGAAAGCCGGGTTATCCGCTGGGC	LOC_Os06g29310
Os.9907.1.S1_s_at--89--789	1	Chr06:16732222..16732246 (25 bp)	GGTTAGTTCTTAGGCTGGGCTACAA	LOC_Os06g29310
Os.9907.1.S1_s_at--839--219	1	Chr06:16732180..16732204 (25 bp)	ACAAACTGCTCCTACAAGCTCTGAG	LOC_Os06g29310
Os.9907.1.S1_s_at--581--903	1	Chr06:16732139..16732163 (25 bp)	TGCAGGATCTGCTTGTAAACCCATG	LOC_Os06g29310
Os.9907.1.S1_s_at--500--525	1	Chr06:16732104..16732128 (25 bp)	GAATCATCAGAATAGCTCTCACCTG	LOC_Os06g29310
Os.9907.1.S1_s_at--368--123	1	Chr06:16732041..16732065 (25 bp)	AGTTCTGATGGGTATAGCCGTCGGT	LOC_Os06g29310
Os.9907.1.S1_s_at--235--125	1	Chr06:16731994..16732018 (25 bp)	AGTTGGATACTGTCATCGCTCTTAA	LOC_Os06g29310
Os.9907.1.S1_s_at--386--811	1	Chr06:16731955..16731979 (25 bp)	GGACACTTGTACATTTGGTGCTAGT	LOC_Os06g29310

Target Sequence

GCCACCTCATAGTTTGCAGGCGGCTGCCATGGGAGCTGGCCTNGGAATGTGGAAGNTTGGTGTGCATCCGGAAAACATAG
CTCTCAATTGTCTTCTCCGGTTATGCCACAAGAGAAGGAAACTTGGAAGGTACTGTACTGGGTACTATGGTAGGTAGGTC
TGCAAANATGCGATACTGCCGTGTATAGTTTAGGTAGAAAGCCGGGTTATCCGCTGGGCTCTTGGGGATAATTTTGGTTC
TTGGTTAGTTCTTAGGCTGGGCTACAAGAGAATGGTCGAATTTGACAAACTGCTCCTACAAGCTCTGAGCTGCCAAGTTG
ACAGCTGCAGGATCTGCTTGTAAACCCATGAGGAAGGGGAGAATCATCAGAATAGCTCTCACCTGCCTGCCCAAATTTCT
GCTTGTAAAGCATTCTGAATTGAAGTTCTGATGGGTATAGCCGTCGGTGGAGTGGAGGCACAACTTTTGGAGTTGGATAC
TGTCATCGCTCTTAAAACCATGCTTTTGGGGACACTTGTACATTTGGTGCTAGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis