Browse Element(s) Details

Os.4509.1.S1_x_at

Description

gb:AU082409
DB_XREF= gi:6934872
DB_XREF=AU082409
CLONE=E30736
TID=Os.4509.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU082409(E30736),C74252(E30736) correspond to a region of the predicted gene.~hypothetical protein (Gene), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02410	10/11	expressed protein
LOC_Os06g29300	1/11	retrotransposon protein, putative, Ty1-copia subclass

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02380	Os.51795.1.S1_at	11/11	6	+	810040..815535	RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02380	Os.12628.1.S1_at	11/11	6	+	810040..815535	RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02390	OsAffx.4696.1.S1_at	11/11	6	+	818374..819357	ADP-ribosylation factor 1, putative
LOC_Os06g02400	Os.44826.1.S1_at	5/11	6	+	824557..828064	F-box domain containing protein
LOC_Os06g02410	OsAffx.30517.2.A1_at	11/11	6	+	827718..829762	expressed protein
LOC_Os06g02410	Os.4509.1.S1_x_at	10/11	6	+	827718..829762	expressed protein
LOC_Os06g02420	Os.4510.1.S1_at	6/11	6	+	831842..833940	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02430	Os.15602.1.S1_x_at	11/11	6	+	834630..838033	expressed protein
LOC_Os06g02430	Os.15602.1.S1_at	10/11	6	+	834630..838033	expressed protein
LOC_Os06g02440	Os.4513.1.S1_at	11/11	6	+	840323..843186	expressed protein
LOC_Os06g02450	Os.53204.1.S1_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02450	OsAffx.10364.1.S1_x_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02460	Os.55439.1.S1_at	11/11	6	+	849898..851193	expressed protein
LOC_Os06g02460	OsAffx.1579.1.S1_x_at	2/11	6	+	849898..851193	expressed protein
LOC_Os06g02470	Os.4516.1.S1_a_at	11/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_at	9/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_x_at	7/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02480	Os.48019.1.S1_at	4/11	6	+	854756..856968	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4509.1.S1_x_at--888--365	1	NONE	CTTCTTGCCTCCTGCAGGAGAGGAG	NONE
Os.4509.1.S1_x_at--871--645	1	Chr06:828592..828616 (25 bp)	GATCAAGCTCATCAGAATTACTCGA	LOC_Os06g02410
Os.4509.1.S1_x_at--987--521	1	Chr06:828578..828602 (25 bp)	GAATTACTCGATTAGCGCACAGGCC	LOC_Os06g02410
Os.4509.1.S1_x_at--95--655	1	Chr06:828569..828593 (25 bp)	GATTAGCGCACAGGCCCAGCCGGAG	LOC_Os06g02410
Os.4509.1.S1_x_at--1120--801	1	Chr06:828545..828569 (25 bp)	GGAGGAGCAGAAGGCCATCCACGAC	LOC_Os06g02410
Os.4509.1.S1_x_at--1--263	1	Chr06:828481..828505 (25 bp)	AACCGCAAGAACGTGGAGGTGCACC	LOC_Os06g02410
Os.4509.1.S1_x_at--572--935	4	Chr03:23854223..23854247 (25 bp)	TCGACATGGCCGCTGCCAATCACAA	NONE
Os.4509.1.S1_x_at--534--593	1	Chr06:828219..828243 (25 bp)	GAGCATCAACTCAGCAGTAGCAGCA	LOC_Os06g02410
Os.4509.1.S1_x_at--404--303	5	Chr03:23854296..23854320 (25 bp)	AATGCCTTCTGAAATCTCATGTACA	NONE
Os.4509.1.S1_x_at--23--347	1	Chr06:828131..828155 (25 bp)	CAGTGAAAATCTTGCGTCGTTGGTT	LOC_Os06g02410
Os.4509.1.S1_x_at--463--465	1	Chr06:828118..828142 (25 bp)	GCGTCGTTGGTTGTATGAATCTTGT	LOC_Os06g02410

Target Sequence

CTTCTTGCCTCCTGCAGGAGAGGAGATCAAGCTCATCAGAATTACTCGATTAGCGCACAGGCCCAGCCGGAGGAGGAGCA
GAAGGCCATCCACGACGGCGGCGGCGCCGCCGGAGCGCAGGTGGAGGCGGCGCTGAACCGCAAGAACGTGGAGGTGCACC
CGGAGGAGGAGACGGTGGAGGACGCGTGGGTGCCCGACCACGAGACCGGCGTCTTTGTCCCCGCCGACGAGGCCGCCGTC
TCCGGCACCGAAAACCACGACCACTGCGGAGCGGCGGCGGCGGCGGCCGGCGGCTCGCCGTCGGTGCTTGACCAGGCGGT
GTTCGTCCGCGAGGAGGACATGGAGGACGTCGANAGGCCGGCCGTCGACATGGCCGCTGCCAATCACAAGCCCAAATGAG
CATCAACTCAGCAGTAGCAGCAATAACCAATAAAGCCAAATAATGCCTTCTGAAATCTCATGTACAACTAGTACTAGAAA
ATTTCCAGTGAAAATCTTGCGTCGTTGGTTGTATGAATCTTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis