Browse Element(s) Details

Os.4516.1.S1_a_at

Description

gb:AK059160.1
DB_XREF= gi:32969178
TID=Os.4516.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C99632(E20954),C99633(E20954) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana putative pathogenesis-related protein (U20347) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-D05, full insert sequence.
FL= gb:AK059160.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02470	11/11	ozone-responsive stress-related protein, putative, expressed
LOC_Os11g06240	1/11	ozone-responsive stress-related protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02400	Os.44826.1.S1_at	5/11	6	+	824557..828064	F-box domain containing protein
LOC_Os06g02410	OsAffx.30517.2.A1_at	11/11	6	+	827718..829762	expressed protein
LOC_Os06g02410	Os.4509.1.S1_x_at	10/11	6	+	827718..829762	expressed protein
LOC_Os06g02420	Os.4510.1.S1_at	6/11	6	+	831842..833940	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02430	Os.15602.1.S1_x_at	11/11	6	+	834630..838033	expressed protein
LOC_Os06g02430	Os.15602.1.S1_at	10/11	6	+	834630..838033	expressed protein
LOC_Os06g02440	Os.4513.1.S1_at	11/11	6	+	840323..843186	expressed protein
LOC_Os06g02450	Os.53204.1.S1_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02450	OsAffx.10364.1.S1_x_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02460	Os.55439.1.S1_at	11/11	6	+	849898..851193	expressed protein
LOC_Os06g02460	OsAffx.1579.1.S1_x_at	2/11	6	+	849898..851193	expressed protein
LOC_Os06g02470	Os.4516.1.S1_a_at	11/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_at	9/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_x_at	7/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02480	Os.48019.1.S1_at	4/11	6	+	854756..856968	hypothetical protein
LOC_Os06g02490	Os.4518.1.S1_a_at	11/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02490	Os.4518.2.S1_x_at	9/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02500	Os.20570.1.S1_x_at	11/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02500	Os.20570.2.S1_at	10/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02510	Os.12590.1.S1_at	11/11	6	+	866370..868825	60S ribosomal protein L13-2, putative, expressed
LOC_Os06g02520	OsAffx.27422.1.S1_at	11/11	6	+	870781..873942	expressed protein
LOC_Os06g02530	Os.9159.2.S1_x_at	11/11	6	+	874377..875368	expressed protein
LOC_Os06g02540	Os.12752.3.S1_x_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02540	Os.12752.1.S1_a_at	11/11	6	+	875862..879529	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0000302	biological_process	response to reactive oxygen species
GO:0006950	biological_process	response to stress
GO:0009618	biological_process	response to pathogenic bacteria
GO:0010193	biological_process	response to ozone
GO:0005739	cellular_component	mitochondrion

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4516.1.S1_a_at--721--987	1	Chr06:853057..853081 (25 bp)	TACATTGCTGGGTCCTTGGTTGGAT	LOC_Os06g02470
Os.4516.1.S1_a_at--1053--1083	1	Chr06:853072..853096 (25 bp)	TTGGTTGGATCCTTCGCCATTGCTT	LOC_Os06g02470
Os.4516.1.S1_a_at--57--445	2	Chr06:853087..853111 (25 bp)	GCCATTGCTTACCTGTGTGACACAT	LOC_Os06g02470
Os.4516.1.S1_a_at--332--747	1	Chr06:853101..853125 (25 bp)	GTGTGACACATTTGTTTCTGACAAG	LOC_Os06g02470
Os.4516.1.S1_a_at--1158--751	1	Chr06:853249..853273 (25 bp)	GTGGCAAGCCACTGACACCAAGTTC	LOC_Os06g02470
Os.4516.1.S1_a_at--114--967	1	Chr06:853320..853344 (25 bp)	TCAGCCGCCAAAACTTCATCGTTAA	LOC_Os06g02470
Os.4516.1.S1_a_at--25--257	1	Chr06:853363..853387 (25 bp)	AACTGGTTCAGTGTCGTGATTTTAC	LOC_Os06g02470
Os.4516.1.S1_a_at--1098--531	1	Chr06:853397..853421 (25 bp)	GAAGTTTGTTTTCTAGGCCTTGAGA	LOC_Os06g02470
Os.4516.1.S1_a_at--595--791	1	Chr06:853444..853468 (25 bp)	GGATACGTTTTGCATTTTTCACTTC	LOC_Os06g02470
Os.4516.1.S1_a_at--621--205	1	Chr06:853464..853488 (25 bp)	ACTTCACCTGTGAGCAAACATTGGA	LOC_Os06g02470
Os.4516.1.S1_a_at--1134--631	1	Chr06:853510..853534 (25 bp)	GATGAATTCTGTTCCTCGGTGAAAA	LOC_Os06g02470

Target Sequence

TACATTGCTGGGTCCTTGGTTGGATCCTTCGCCATTGCTTACCTGTGTGACACATTTGTTTCTGACAAGAAGGCATTTGG
AGGTTCCATTCCAAAGACTGTCTCTGACAAGGAGTGGTGGCAAGCCACTGACACCAAGTTCCAGGCCTGGCCTCGCACCG
CTGGACCACCAGTCATCATGAACCCCATCAGCCGCCAAAACTTCATCGTTAAGTCCACTTAGACGAGAGAAACTGGTTCA
GTGTCGTGATTTTACCATGAATATGAAGTTTGTTTTCTAGGCCTTGAGATTGTAATAAGATGCAACAGTCAGGATACGTT
TTGCATTTTTCACTTCACCTGTGAGCAAACATTGGAGCTTACATTATACTCACATTTGATGAATTCTGTTCCTCGGTGAA
AA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis