Browse Element(s) Details

Os.9159.2.S1_x_at

Description

gb:AK073098.1
DB_XREF= gi:32983121
TID=Os.9159.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU058449(E51284),AU222626(E51284)~unknown protein (OSJNBa0019F11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033003O07, full insert sequence.
FL= gb:AK073098.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02530	11/11	expressed protein
LOC_Os07g46280	1/11	Glycosyl hydrolase family 1 protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02460	Os.55439.1.S1_at	11/11	6	+	849898..851193	expressed protein
LOC_Os06g02460	OsAffx.1579.1.S1_x_at	2/11	6	+	849898..851193	expressed protein
LOC_Os06g02470	Os.4516.1.S1_a_at	11/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_at	9/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_x_at	7/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02480	Os.48019.1.S1_at	4/11	6	+	854756..856968	hypothetical protein
LOC_Os06g02490	Os.4518.1.S1_a_at	11/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02490	Os.4518.2.S1_x_at	9/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02500	Os.20570.1.S1_x_at	11/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02500	Os.20570.2.S1_at	10/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02510	Os.12590.1.S1_at	11/11	6	+	866370..868825	60S ribosomal protein L13-2, putative, expressed
LOC_Os06g02520	OsAffx.27422.1.S1_at	11/11	6	+	870781..873942	expressed protein
LOC_Os06g02530	Os.9159.2.S1_x_at	11/11	6	+	874377..875368	expressed protein
LOC_Os06g02540	Os.12752.3.S1_x_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02540	Os.12752.1.S1_a_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02550	Os.7910.1.S1_at	11/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02550	Os.44823.1.S1_x_at	10/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02560	Os.32618.1.S1_at	11/11	6	+	892175..895357	growth-regulating factor, putative, expressed
LOC_Os06g02560	OsAffx.29241.1.S1_s_at	1/11	6	+	892175..895357	growth-regulating factor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016481	biological_process	negative regulation of transcription
GO:0004407	molecular_function	histone deacetylase activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9159.2.S1_x_at--129--273	1	Chr06:874931..874955 (25 bp)	AAGCAGCAGATCGTCGACGAGCCGT	LOC_Os06g02530
Os.9159.2.S1_x_at--1057--817	1	Chr06:874810..874834 (25 bp)	GGAAGCTCAGCGACGAGTTCGACCG	LOC_Os06g02530
Os.9159.2.S1_x_at--955--53	1	Chr06:874575..874599 (25 bp)	ATCGCCGAGGATGAAGCACTGAGAG	LOC_Os06g02530
Os.9159.2.S1_x_at--265--601	1	Chr06:874553..874577 (25 bp)	GAGAGGTGGCCTGCTTAATGTGAAA	LOC_Os06g02530
Os.9159.2.S1_x_at--274--843	1	Chr06:874546..874570 (25 bp)	GGCCTGCTTAATGTGAAATCCTAGT	LOC_Os06g02530
Os.9159.2.S1_x_at--90--229	1	Chr06:874531..874555 (25 bp)	AAATCCTAGTTCTTGCTCTGTTACA	LOC_Os06g02530
Os.9159.2.S1_x_at--408--481	1	Chr06:874517..874541 (25 bp)	GCTCTGTTACATTGGTCGCTCTAGA	LOC_Os06g02530
Os.9159.2.S1_x_at--632--779	1	Chr06:874504..874528 (25 bp)	GGTCGCTCTAGAGAATCGAGATGTG	LOC_Os06g02530
Os.9159.2.S1_x_at--511--707	2	Chr07:27614384..27614404 (21 bp)	GTAATGTGTTATGTGTGTGTGCTAA	LOC_Os07g46280
Os.9159.2.S1_x_at--421--557	1	Chr06:874421..874445 (25 bp)	GAAATGTGATGCTAATCTCTGAATT	LOC_Os06g02530
Os.9159.2.S1_x_at--179--901	1	Chr06:874391..874415 (25 bp)	TGAATTCCTGAATCAACACATTTCC	LOC_Os06g02530

Target Sequence

AAGCAGCAGATCGTCGACGAGCCGTCGGAGTCGGAGNAGGAGCAGGAGGAGGAGAACGAGGAAGAGGAAGAGGAGGAAGC
CCTCGCCACCCTCGCCGCCGCGGCCAAGAGGAAGCGGGCGAGGAAGCTCAGCGACGAGTTCGACCGCGTCGCGACCATNC
AGGAGGGGGAGGCCAAGAAGCAGAAGCCCGCAGCAACCTNTACACCGGNCGAGGACTTCACCGAGGAGGAAGGCCGCCGA
GGTGGCTCTCACCCCGGCGCCGGCGAGGGCGTCACCGNGGGGGAAGGCTGCTGCCGAGGGGGCTACTGCTGCACCGGCGA
GGGCGTCGCCGAGGAGGAAGGCCGCGGCAAGGAGGACATCGCCGAGGATGAAGCACTGAGAGAGGTGGCCTGCTTAATGT
GAAATCCTAGTTCTTGCTCTGTTACATTGGTCGCTCTAGAGAATCGAGATGTGATTGATGGATATGTAATGTGTTATGTG
TGTGTGCTAAGTATTTAGTGATGAAACCATTGAAATGTGATGCTAATCTCTGAATTAGTCATGAATTCCTGAATCAACAC
ATTTCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis