Browse Element(s) Details


OsAffx.29241.1.S1_s_at

Description tigr:9636.m01691
TID=OsAffx.29241.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1682011/11hypothetical protein
LOC_Os06g025601/11growth-regulating factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16780Os.57070.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.29239.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780Os.6249.1.A1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.15916.1.S1_at1/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16790Os.50148.1.S1_at10/118+10263233..10264396expressed protein
LOC_Os08g16800OsAffx.2692.1.S1_at3/118+10278480..10278992hypothetical protein
LOC_Os08g16810Os.18297.1.S1_at10/118+10280715..10281496expressed protein
LOC_Os08g16820OsAffx.29241.1.S1_s_at11/118+10285855..10286478hypothetical protein
LOC_Os08g16830Os.6767.1.S1_at11/118+10287896..10288799expressed protein
LOC_Os08g16840Os.17340.1.S1_at11/118+10290580..10294388F-box domain containing protein, expressed
LOC_Os08g16850NANA8+10295098..10295376hypothetical protein
LOC_Os08g16860Os.23377.1.A1_s_at11/118+10310634..10314808F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29241.1.S1_s_at--670--9191Chr08:10286407..10286431 (25 bp)
TGCCTCACAGGCCACATGGTGTGAT
LOC_Os08g16820
OsAffx.29241.1.S1_s_at--598--3491Chr08:10286400..10286424 (25 bp)
CAGGCCACATGGTGTGATGCCGAGA
LOC_Os08g16820
OsAffx.29241.1.S1_s_at--429--1831Chr08:10286369..10286393 (25 bp)
ACGCGATCAATGGAGCTCGTCTGAG
LOC_Os08g16820
OsAffx.29241.1.S1_s_at--634--5991Chr08:10286347..10286371 (25 bp)
GAGACCTCATCTCCAGTTTGAAGAA
LOC_Os08g16820
OsAffx.29241.1.S1_s_at--327--8991Chr08:10286176..10286353 (25 bp)
TGAAGAATTGCATGTCACTGATGGC
LOC_Os08g16820
OsAffx.29241.1.S1_s_at--959--4992Chr08:10286167..10286187 (21 bp)
GCATGTCACTGATGGCAAGAAGCTT
LOC_Os08g16820
OsAffx.29241.1.S1_s_at--969--8631Chr08:10286143..10286167 (25 bp)
TGGGCAAGCAGCTGACACTGACACT
LOC_Os08g16820
OsAffx.29241.1.S1_s_at--867--1971Chr08:10286115..10286139 (25 bp)
ACTGACACTGAGAGCCACAAGCACC
LOC_Os08g16820
OsAffx.29241.1.S1_s_at--143--6011Chr08:10286106..10286130 (25 bp)
GAGAGCCACAAGCACCATGACGAGG
LOC_Os08g16820
OsAffx.29241.1.S1_s_at--1132--1711Chr08:10286093..10286117 (25 bp)
ACCATGACGAGGTGAAGGTTCCGAT
LOC_Os08g16820
OsAffx.29241.1.S1_s_at--699--7891Chr08:10286077..10286101 (25 bp)
GGTTCCGATGAGAATGGCCATAGCA
LOC_Os08g16820
Target Sequence 
TGCCTCACAGGCCACATGGTGTGATGCCGAGAGAAGCCACGCGATCAATGGAGCTCGTCTGAGACCTCATCTCCAGTTTG
AAGAATTGCATGTCACTGATGGCAAGAAGCTTGGGCAAGCAGCTGACACTGACACTGACACTGACACTGAGAGCCACAAG
CACCATGACGAGGTGAAGGTTCCGATGAGAATGGCCATAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29241.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis