Browse Element(s) Details


Os.18297.1.S1_at

Description gb:AK062738.1
DB_XREF= gi:32972756
TID=Os.18297.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E12, full insert sequence.
FL= gb:AK062738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1681010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16780Os.57070.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.29239.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780Os.6249.1.A1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.15916.1.S1_at1/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16790Os.50148.1.S1_at10/118+10263233..10264396expressed protein
LOC_Os08g16800OsAffx.2692.1.S1_at3/118+10278480..10278992hypothetical protein
LOC_Os08g16810Os.18297.1.S1_at10/118+10280715..10281496expressed protein
LOC_Os08g16820OsAffx.29241.1.S1_s_at11/118+10285855..10286478hypothetical protein
LOC_Os08g16830Os.6767.1.S1_at11/118+10287896..10288799expressed protein
LOC_Os08g16840Os.17340.1.S1_at11/118+10290580..10294388F-box domain containing protein, expressed
LOC_Os08g16850NANA8+10295098..10295376hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18297.1.S1_at--975--6551Chr08:10281344..10281368 (25 bp)
GATTACTACAGCTCATCTGAGGCCT
LOC_Os08g16810
Os.18297.1.S1_at--111--8891Chr08:10281327..10281351 (25 bp)
TGAGGCCTCATCTCCATGTAGAAGA
LOC_Os08g16810
Os.18297.1.S1_at--926--1471Chr08:10281158..10281329 (25 bp)
AGAATTGCATGGCAAGAAGCTCATG
LOC_Os08g16810
Os.18297.1.S1_at--757--1951Chr08:10280939..10280963 (25 bp)
ACTGGCTATCACCTGTGCCGCTGTT
LOC_Os08g16810
Os.18297.1.S1_at--503--10331Chr08:10280906..10280930 (25 bp)
TTTCAGCTTCTGATCAGATGTGTCG
LOC_Os08g16810
Os.18297.1.S1_at--100--10591Chr08:10280899..10280923 (25 bp)
TTCTGATCAGATGTGTCGGTGGTGT
LOC_Os08g16810
Os.18297.1.S1_at--789--6291Chr08:10280794..10280818 (25 bp)
GATGATCACTGAATTCGTGTGCTGT
LOC_Os08g16810
Os.18297.1.S1_at--730--3331Chr08:10280788..10280812 (25 bp)
CACTGAATTCGTGTGCTGTGTGTCC
LOC_Os08g16810
Os.18297.1.S1_at--924--8771Chr08:10280739..10280763 (25 bp)
TGTTTTCATGGCTAATTATCAGCAT
LOC_Os08g16810
Os.18297.1.S1_at--243--10431Chr08:10280724..10280748 (25 bp)
TTATCAGCATGCATCTTATTGTTGA
LOC_Os08g16810
Os.18297.1.S1_at--154--9071Chr08:10280715..10280739 (25 bp)
TGCATCTTATTGTTGATTCGTCATC
NONE
Target Sequence 
GATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCA
GGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCGCGGGCGCCGCCGCGGCC
GCCGGCGCAGGCGGCGGAGGANNNNNNNNNNNNNNNNCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGC
GACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGG
TGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGT
GNTGATGATCACTGAATTCGTGTGCTGTGTGTCCAGTTCGTCANAAGTACACTGAAATTGTTTTCATGGCTAATTATCAG
CATGCATCTTATTGTTGATTCGTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis