Browse Element(s) Details


Os.57070.1.S1_at

Description gb:AK110860.1
DB_XREF= gi:32996069
TID=Os.57070.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-D05, full insert sequence.
FL= gb:AK110860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1678011/11Sin-like protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16740Os.54043.1.S1_at1/118+10226160..10228406hypothetical protein
LOC_Os08g16750OsAffx.5846.1.S1_at11/118+10238964..10239264hypothetical protein
LOC_Os08g16760NANA8+10242761..10246000Zinc knuckle family protein
LOC_Os08g16770NANA8+10246310..10249360transposon protein, putative, Mutator sub-class
LOC_Os08g16780Os.57070.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.29239.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780Os.6249.1.A1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.15916.1.S1_at1/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16790Os.50148.1.S1_at10/118+10263233..10264396expressed protein
LOC_Os08g16800OsAffx.2692.1.S1_at3/118+10278480..10278992hypothetical protein
LOC_Os08g16810Os.18297.1.S1_at10/118+10280715..10281496expressed protein
LOC_Os08g16820OsAffx.29241.1.S1_s_at11/118+10285855..10286478hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57070.1.S1_at--957--7831Chr08:10252434..10252458 (25 bp)
GGTACATGCCCAATTAACTGTCCTC
LOC_Os08g16780
Os.57070.1.S1_at--343--2571Chr08:10252449..10252473 (25 bp)
AACTGTCCTCTTTTGATGATTTATA
LOC_Os08g16780
Os.57070.1.S1_at--204--671Chr08:10252534..10252558 (25 bp)
ATGACTGTCAGGTTCGTGTAAAGCC
LOC_Os08g16780
Os.57070.1.S1_at--992--5471Chr08:10252647..10252671 (25 bp)
GAACAGGTGATCATTTCCTTTTTGT
LOC_Os08g16780
Os.57070.1.S1_at--696--1011Chr08:10252694..10252718 (25 bp)
AGGTTTTCCTTTGCTGTGTACAGAG
LOC_Os08g16780
Os.57070.1.S1_at--578--5951Chr08:10252716..10252740 (25 bp)
GAGCAAACTCTTATGTATGGCCAGC
LOC_Os08g16780
Os.57070.1.S1_at--948--8431Chr08:10252733..10252757 (25 bp)
TGGCCAGCATATTTCTACAATCCGC
LOC_Os08g16780
Os.57070.1.S1_at--39--4231Chr08:10252754..10252778 (25 bp)
CCGCATGGTGTTCTTATTAGTTTTG
LOC_Os08g16780
Os.57070.1.S1_at--503--2291Chr08:10252808..10252832 (25 bp)
AAATGTTTACGTTCATCTCTGAAGT
LOC_Os08g16780
Os.57070.1.S1_at--1049--4431Chr08:10252850..10252874 (25 bp)
GCCATTTGAGTGATCTTTTGCAGTA
LOC_Os08g16780
Os.57070.1.S1_at--530--1211Chr08:10252876..10252900 (25 bp)
AGTTAATCTTCCTGTCTATTTCAAA
LOC_Os08g16780
Target Sequence 
GGTACATGCCCAATTAACTGTCCTCTTTTGATGATTTATACCTAATTTGGAATTTATACTGTACTATTTAATTGTACTCC
AATACTTTATTAAAGGGATTATGACTGTCAGGTTCGTGTAAAGCCATTGAGTTCAAAAGTTGAAGTAGACTTGGATATCA
ATACAGAGTGTGAAAATTATGACCCAGAGGTTCCTCTGCCTTCTAGACTAACTGAACAGGTGATCATTTCCTTTTTGTTT
TCACTGAATTAATCACATCAAGGTTTTCCTTTGCTGTGTACAGAGCAAACTCTTATGTATGGCCAGCATATTTCTACAAT
CCGCATGGTGTTCTTATTAGTTTTGGAATAACTCGATTTCATATTTTTGCTGTTAAATGTTTACGTTCATCTCTGAAGTA
CATATTTCATAGTATTGCCATTTGAGTGATCTTTTGCAGTATAGTTAATCTTCCTGTCTATTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis