Browse Element(s) Details


OsAffx.29239.1.S1_at

Description tigr:9636.m01686
TID=OsAffx.29239.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1678011/11Sin-like protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16740Os.54043.1.S1_at1/118+10226160..10228406hypothetical protein
LOC_Os08g16750OsAffx.5846.1.S1_at11/118+10238964..10239264hypothetical protein
LOC_Os08g16760NANA8+10242761..10246000Zinc knuckle family protein
LOC_Os08g16770NANA8+10246310..10249360transposon protein, putative, Mutator sub-class
LOC_Os08g16780Os.57070.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.29239.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780Os.6249.1.A1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.15916.1.S1_at1/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16790Os.50148.1.S1_at10/118+10263233..10264396expressed protein
LOC_Os08g16800OsAffx.2692.1.S1_at3/118+10278480..10278992hypothetical protein
LOC_Os08g16810Os.18297.1.S1_at10/118+10280715..10281496expressed protein
LOC_Os08g16820OsAffx.29241.1.S1_s_at11/118+10285855..10286478hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29239.1.S1_at--757--6431Chr08:10258851..10258875 (25 bp)
GATCATGCTTGGTCTGTACGTGAGA
LOC_Os08g16780
OsAffx.29239.1.S1_at--179--1411Chr08:10258873..10258897 (25 bp)
AGACAACTATGCGTGAATCTCAAGA
LOC_Os08g16780
OsAffx.29239.1.S1_at--319--5251Chr08:10258887..10258911 (25 bp)
GAATCTCAAGAGACATCCAGCAATA
LOC_Os08g16780
OsAffx.29239.1.S1_at--307--5991Chr08:10258896..10258920 (25 bp)
GAGACATCCAGCAATACTGAGGCAA
LOC_Os08g16780
OsAffx.29239.1.S1_at--678--3211Chr08:10258940..10258964 (25 bp)
CAAGTCTAACATTCCTTCAAAAGGG
LOC_Os08g16780
OsAffx.29239.1.S1_at--608--2871Chr08:10258960..10258984 (25 bp)
AAGGGCCTGATCCAAATATGAACAA
LOC_Os08g16780
OsAffx.29239.1.S1_at--599--2251Chr08:10258973..10258997 (25 bp)
AAATATGAACAAGGCCAGGGATGGT
LOC_Os08g16780
OsAffx.29239.1.S1_at--388--8151Chr08:10259007..10259031 (25 bp)
GGAAATGAAAACCTCGTGCACTCTG
LOC_Os08g16780
OsAffx.29239.1.S1_at--85--4011Chr08:10259021..10259045 (25 bp)
CGTGCACTCTGTTTTGGATACTATT
LOC_Os08g16780
OsAffx.29239.1.S1_at--8--7951Chr08:10259036..10259060 (25 bp)
GGATACTATTTTCACTGCCAACAAA
LOC_Os08g16780
OsAffx.29239.1.S1_at--508--10371Chr08:10259044..10259068 (25 bp)
TTTTCACTGCCAACAAAGTCCGCAG
LOC_Os08g16780
Target Sequence 
GATCATGCTTGGTCTGTACGTGAGACAACTATGCGTGAATCTCAAGAGACATCCAGCAATACTGAGGCAAGGAAAACCAA
GAACACAACCAAGTCTAACATTCCTTCAAAAGGGCCTGATCCAAATATGAACAAGGCCAGGGATGGTCCAGTGCAAGGAA
ATGAAAACCTCGTGCACTCTGTTTTGGATACTATTTTCACTGCCAACAAAGTCCGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis