Browse Element(s) Details


Os.50148.1.S1_at

Description gb:AK119946.1
DB_XREF= gi:37989569
TID=Os.50148.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-B12, full insert sequence.
FL= gb:AK119946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1679010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16750OsAffx.5846.1.S1_at11/118+10238964..10239264hypothetical protein
LOC_Os08g16760NANA8+10242761..10246000Zinc knuckle family protein
LOC_Os08g16770NANA8+10246310..10249360transposon protein, putative, Mutator sub-class
LOC_Os08g16780Os.57070.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.29239.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780Os.6249.1.A1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.15916.1.S1_at1/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16790Os.50148.1.S1_at10/118+10263233..10264396expressed protein
LOC_Os08g16800OsAffx.2692.1.S1_at3/118+10278480..10278992hypothetical protein
LOC_Os08g16810Os.18297.1.S1_at10/118+10280715..10281496expressed protein
LOC_Os08g16820OsAffx.29241.1.S1_s_at11/118+10285855..10286478hypothetical protein
LOC_Os08g16830Os.6767.1.S1_at11/118+10287896..10288799expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50148.1.S1_at--1110--4431NONE
GCCATTGCTGGATTGGGCGCAGACA
NONE
Os.50148.1.S1_at--139--871Chr08:10263775..10263799 (25 bp)
ATGGCGCAGATCAAGCTCAACCTAC
LOC_Os08g16790
Os.50148.1.S1_at--273--5431Chr08:10263718..10263742 (25 bp)
GAAGCCACCATCTCCAGAGGCGATT
LOC_Os08g16790
Os.50148.1.S1_at--700--71Chr08:10263683..10263707 (25 bp)
ATTGCTCGCCGAGATCTGCGCGAAA
LOC_Os08g16790
Os.50148.1.S1_at--418--5531Chr08:10263662..10263686 (25 bp)
GAAACTCGACGCGATCTCCAAAACG
LOC_Os08g16790
Os.50148.1.S1_at--1159--2371Chr08:10263642..10263666 (25 bp)
AAACGCGTCAGGATTCATCATCAGA
LOC_Os08g16790
Os.50148.1.S1_at--315--6151Chr08:10263523..10263547 (25 bp)
GAGGTGAGTGCGATCATCTTCTCTA
LOC_Os08g16790
Os.50148.1.S1_at--104--4931Chr08:10263494..10263518 (25 bp)
GCTTGTTAGGCCCTTGCTCAAGGTT
LOC_Os08g16790
Os.50148.1.S1_at--707--4831Chr08:10263479..10263503 (25 bp)
GCTCAAGGTTGCTGCATCCATGTCA
LOC_Os08g16790
Os.50148.1.S1_at--1120--211Chr08:10263436..10263460 (25 bp)
ATATTGGTACTAGCTCTGGTGTTCA
LOC_Os08g16790
Os.50148.1.S1_at--931--2711Chr08:10263373..10263397 (25 bp)
AAGCAGTGGCATTCAGTGCTCAGGA
LOC_Os08g16790
Target Sequence 
GCCATTGCTGGATTGGGCGCAGACATGGCGCAGATCAAGCTCAACCTACAAAGTCTTCACACCGAATTCATCAAAGCGAA
GGAAGCCACCATCTCCAGAGGCGATTCGCAGGCGCGATTGCTCGCCGAGATCTGCGCGAAACTCGACGCGATCTCCAAAA
CGCGTCAGGATTCATCATCAGATGATCCTGTGCAGGTGAGAGTGAGCAGGGAAGAAGGCAGCTCATCCAAAGGGAGAAGC
TACACAAATAGTGAGCTGCTGATGAACCATTTCATTGAGGTGAGTGCGATCATCTTCTCTACTCTGCTTGTTAGGCCCTT
GCTCAAGGTTGCTGCATCCATGTCATTCTTTAGGTGCTTCTTGATATTGGTACTAGCTCTGGTGTTCAGAAAAGTTTTGA
TGAACTAGTGATGTGTACTAAGCACTAAGCAGTGGCATTCAGTGCTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis