Browse Element(s) Details


OsAffx.2692.1.S1_at

Description tigr:9630.m01910
TID=OsAffx.2692.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1998011/11hypothetical protein
LOC_Os08g168003/11hypothetical protein
LOC_Os02g122402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19924OsAffx.24336.1.S1_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.24336.1.S1_x_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12124.1.S1_at10/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.1.S1_x_at6/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.52238.1.S1_at3/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.3.S1_x_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.49936.2.A1_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.15708.1.S1_at1/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19950Os.41918.1.S1_x_at8/112+11737374..11741808expressed protein
LOC_Os02g19950Os.41918.1.S1_at8/112+11737374..11741808expressed protein
LOC_Os02g19950Os.47711.1.A1_s_at5/112+11737374..11741808expressed protein
LOC_Os02g19950Os.28219.1.S1_at3/112+11737374..11741808expressed protein
LOC_Os02g19960NANA2+11743444..11743953transposon protein, putative, unclassified
LOC_Os02g19970Os.51076.1.S1_at11/112+11749118..11753707tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19980OsAffx.2692.1.S1_at11/112+11755497..11757579hypothetical protein
LOC_Os02g19990Os.57017.1.S1_at11/112+11758498..11762729Reticulon family protein, expressed
LOC_Os02g19990Os.49538.1.S1_at1/112+11758498..11762729Reticulon family protein, expressed
LOC_Os02g20000OsAffx.24338.1.S1_at11/112+11771411..11777938hypothetical protein
LOC_Os02g20010NANA2+11779222..11785227retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2692.1.S1_at--4--1657Chr10:13115557..13115580 (24 bp)
ACCCGAAAGCAAGATTTAGGACCTG
NONE
OsAffx.2692.1.S1_at--468--9791Chr02:11756239..11756263 (25 bp)
TAAGCAGATCTCTCATACTAGTATG
LOC_Os02g19980
OsAffx.2692.1.S1_at--1057--5032Chr02:11756242..11756266 (25 bp)
GCAGATCTCTCATACTAGTATGTGT
LOC_Os02g19980
OsAffx.2692.1.S1_at--447--1192Chr03:23930825..23930916 (25 bp)
AGTATGTGTTTTTCGCATGAACAGC
NONE
OsAffx.2692.1.S1_at--730--6811Chr02:11756265..11756289 (25 bp)
GTTTTTCGCATGAACAGCAGGCTGA
LOC_Os02g19980
OsAffx.2692.1.S1_at--179--1531Chr02:11756280..11756304 (25 bp)
AGCAGGCTGACGAAGGAGTCTGTCC
LOC_Os02g19980
OsAffx.2692.1.S1_at--842--4113Chr02:11756290..11756314 (25 bp)
CGAAGGAGTCTGTCCGTGGGAACAT
LOC_Os02g19980
OsAffx.2692.1.S1_at--744--7253Chr02:11756301..11756325 (25 bp)
GTCCGTGGGAACATGGTCGCCGCCA
LOC_Os02g19980
OsAffx.2692.1.S1_at--546--7294Chr06:3047925..3048054 (25 bp)
GTGCCCGTGCCGTCGAGCCACTGGA
NONE
OsAffx.2692.1.S1_at--1061--4234Chr06:3048039..3048063 (25 bp)
CCGTCGAGCCACTGGAGCTTGTCGG
NONE
OsAffx.2692.1.S1_at--191--7111Chr02:11756366..11756390 (25 bp)
GTCACCGAGCGCGCGGAGATGCACA
LOC_Os02g19980
Target Sequence 
ACCCGAAAGCAAGATTTAGGACCTGCACTAGAGTTAAGCAGATCTCTCATACTAGTATGTGTTTTTCGCATGAACAGCAG
GCTGACGAAGGAGTCTGTCCGTGGGAACATGGTCGCCGCCATGAGCGTGCCCGTGCCGTCGAGCCACTGGAGCTTGTCGG
CGTCACCGAGCGCGCGGAGATGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis