Browse Element(s) Details


OsAffx.15708.1.S1_at

Description tigr:9634.m03102
TID=OsAffx.15708.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g175301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g054501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g219301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g199241/11tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os07g221401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g445501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g073701/11retrotransposon protein, putative, unclassified
LOC_Os01g478701/11hypothetical protein
LOC_Os10g148501/11hypothetical protein
LOC_Os04g417201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g184801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g338001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g138901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g221901/11hypothetical protein
LOC_Os04g063601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g386201/11hypothetical protein
LOC_Os08g151301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g407601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17490Os.52453.1.S1_at11/116+10145844..10148403Protein kinase domain containing protein, expressed
LOC_Os06g17500Os.37806.1.S1_at11/116+10148827..10151293expressed protein
LOC_Os06g17510OsAffx.15476.1.S1_at10/116+10154244..10155769hypothetical protein
LOC_Os06g17520Os.45173.1.S1_x_at2/116+10157496..10164259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17530OsAffx.15708.1.S1_at1/116+10167714..10169371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17530Os.49936.2.A1_at1/116+10167714..10169371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17530Os.26999.1.A1_at1/116+10167714..10169371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17540OsAffx.21779.1.S1_at2/116+10171850..10172653Zinc knuckle family protein
LOC_Os06g17550NANA6+10177767..10178313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17560NANA6+10183359..10184118embryogenesis transmembrane protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0001560biological_processregulation of cell growth by extracellular stimulus
GO:0009058biological_processbiosynthesis
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15708.1.S1_at--407--6771Chr06:19268849..19268873 (25 bp)
GTTAACATCAATCTCCATGCCATTG
NONE
OsAffx.15708.1.S1_at--100--3052Chr06:19268840..19268864 (25 bp)
AATCTCCATGCCATTGCTTCTGCTT
NONE
OsAffx.15708.1.S1_at--509--4911Chr06:19268825..19268849 (25 bp)
GCTTCTGCTTTTACCTTCGCAGGAA
NONE
OsAffx.15708.1.S1_at--934--10351Chr06:19268817..19268841 (25 bp)
TTTTACCTTCGCAGGAAGATCTGGA
NONE
OsAffx.15708.1.S1_at--389--3491Chr06:19268806..19268830 (25 bp)
CAGGAAGATCTGGAGGCAAGTTGTC
NONE
OsAffx.15708.1.S1_at--293--8231Chr06:19268792..19268816 (25 bp)
GGCAAGTTGTCCAAGACCGATCGCT
NONE
OsAffx.15708.1.S1_at--70--5831Chr06:19268781..19268802 (22 bp)
GACCGATCGCTTGCAAGCACTGGGA
NONE
OsAffx.15708.1.S1_at--1006--509314Chr12:1798357..1798798 (25 bp)
GCACTGGGAATGTGTGACTTGCCTT
NONE
OsAffx.15708.1.S1_at--364--8611Chr06:19268233..19268257 (25 bp)
TGGTGCTCGGCACGGTGATGTCGAC
NONE
OsAffx.15708.1.S1_at--354--6271Chr06:19268217..19268241 (25 bp)
GATGTCGACGACAGCCTCAGTGCTG
NONE
OsAffx.15708.1.S1_at--542--3431Chr06:19268033..19268057 (25 bp)
CAGAGTGGCGATGACCAGGGCGGCA
NONE
Target Sequence 
GTTAACATCAATCTCCATGCCATTGCTTCTGCTTTTACCTTCGCAGGAAGATCTGGAGGCAAGTTGTCCAAGACCGATCG
CTTGCAAGCACTGGGAATGTGTGACTTGCCTTGCATCTTCACTTCGATCTGGGGAGGGGTTCGCGGCAGAGGGGTGGTTG
CAGTGGCGATCTGGGGAAGCAAAGCGGATGCTGGGGTGGTGCTCGGCACGGTGATGTCGACGACAGCCTCAGTGCTGTGC
GGGGTGGTTAGGGGTGGTGGCAAGGTGCGGATGGACGCGACGGGAGGTGGTGGAGCTCGGGTTCATGGTGAAGGGGTGAT
TGCGGTGGTGATTCGGGGAAATAAAGGGGCGGCCGTTGTGTGGGGAGGGGCTGCGGAGCTAGTGGTGGCGGCGGCGCAGA
GTGGCGATGACCAGGGCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis