Browse Element(s) Details


Os.52453.1.S1_at

Description gb:AK067208.1
DB_XREF= gi:32977226
TID=Os.52453.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097F02, full insert sequence.
FL= gb:AK067208.1 gb:AK105829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1749011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17440Os.12142.1.S1_at11/116+10119999..10123401TMV-MP30 binding protein 2C, putative, expressed
LOC_Os06g17450OsAffx.15474.1.S1_s_at11/116+10125760..10126396expressed protein
LOC_Os06g17460OsAffx.15475.1.S1_at11/116+10130034..10130805Fasciclin domain containing protein
LOC_Os06g17470OsAffx.27686.1.S1_at11/116+10134169..10134609hypothetical protein
LOC_Os06g17480Os.9495.1.S1_at11/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17480OsAffx.23994.1.S1_x_at1/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17490Os.52453.1.S1_at11/116+10145844..10148403Protein kinase domain containing protein, expressed
LOC_Os06g17500Os.37806.1.S1_at11/116+10148827..10151293expressed protein
LOC_Os06g17510OsAffx.15476.1.S1_at10/116+10154244..10155769hypothetical protein
LOC_Os06g17520Os.45173.1.S1_x_at2/116+10157496..10164259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17530OsAffx.15708.1.S1_at1/116+10167714..10169371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17530Os.49936.2.A1_at1/116+10167714..10169371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17530Os.26999.1.A1_at1/116+10167714..10169371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17540OsAffx.21779.1.S1_at2/116+10171850..10172653Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52453.1.S1_at--704--7671Chr06:10147815..10147839 (25 bp)
GGGTTCTACCGCGACGAGATGCTCC
LOC_Os06g17490
Os.52453.1.S1_at--281--9051Chr06:10147909..10147933 (25 bp)
TGCAGATCCTGAACCGCGAGGCAGA
LOC_Os06g17490
Os.52453.1.S1_at--1058--9471Chr06:10148067..10148091 (25 bp)
TCTGAGGGCGGCGACATTGAACGCT
LOC_Os06g17490
Os.52453.1.S1_at--660--10751Chr06:10148083..10148107 (25 bp)
TTGAACGCTAGCTGCTGACACTGAT
LOC_Os06g17490
Os.52453.1.S1_at--411--7931Chr06:10148180..10148204 (25 bp)
GGATTGTATTTGTGATGTGCTCCTA
LOC_Os06g17490
Os.52453.1.S1_at--468--351Chr06:10148213..10148237 (25 bp)
ATAAGTAATAATCCCCGCTGTTGTA
LOC_Os06g17490
Os.52453.1.S1_at--350--9311Chr06:10148224..10148248 (25 bp)
TCCCCGCTGTTGTACGAGTTTTGAA
LOC_Os06g17490
Os.52453.1.S1_at--496--311Chr06:10148249..10148273 (25 bp)
ATACTTATACATCTACCACTACCAA
LOC_Os06g17490
Os.52453.1.S1_at--427--2031Chr06:10148266..10148290 (25 bp)
ACTACCAAGGTGTGTTTCAGCACGT
LOC_Os06g17490
Os.52453.1.S1_at--615--6831Chr06:10148279..10148303 (25 bp)
GTTTCAGCACGTTGTTCAGACATCT
LOC_Os06g17490
Os.52453.1.S1_at--665--10451Chr06:10148320..10148344 (25 bp)
TTAGAGACCCACTTCACTTACTTGA
LOC_Os06g17490
Target Sequence 
GGGTTCTACCGCGACGAGATGCTCCGGCTGCTGCTCGTCGGGCTGAGCTGCGCGAACCCCAACTGCGACGAGCGCCCGGC
GATGCGTCGCGTGGTGCAGATCCTGAACCGCGAGGCAGAGCCGGTGCCCGTGCCGCGGAAGAAGCCGCTGCTCGTGTTCA
GNTCCAGCGCGTCGATCAAGCTGCAGGAGATCGCCTTTGCCTGCGGCGACGACGTCCGCGGCGGCCTTCCGGCGGCGGCC
ACGTCGCCGAGGTCTGAGGGCGGCGACATTGAACGCTAGCTGCTGACACTGATCACTGAANCAGAGNAAAGGATAATACT
GAGTATGAATTACTANTACTAGTGTGATTCTTATACACGATTGATGGATTGTATTTGTGATGTGCTCCTAAGGGGAATAT
AAGTAATAATCCCCGCTGTTGTACGAGTTTTGAAATACTTATACATCTACCACTACCAAGGTGTGTTTCAGCACGTTGTT
CAGACATCTTGTGTGAAATATATTGTTAGAGACCCACTTCACTTACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis