Browse Element(s) Details


OsAffx.27686.1.S1_at

Description tigr:9634.m01761
TID=OsAffx.27686.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1747011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17440Os.12142.1.S1_at11/116+10119999..10123401TMV-MP30 binding protein 2C, putative, expressed
LOC_Os06g17450OsAffx.15474.1.S1_s_at11/116+10125760..10126396expressed protein
LOC_Os06g17460OsAffx.15475.1.S1_at11/116+10130034..10130805Fasciclin domain containing protein
LOC_Os06g17470OsAffx.27686.1.S1_at11/116+10134169..10134609hypothetical protein
LOC_Os06g17480Os.9495.1.S1_at11/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17480OsAffx.23994.1.S1_x_at1/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17490Os.52453.1.S1_at11/116+10145844..10148403Protein kinase domain containing protein, expressed
LOC_Os06g17500Os.37806.1.S1_at11/116+10148827..10151293expressed protein
LOC_Os06g17510OsAffx.15476.1.S1_at10/116+10154244..10155769hypothetical protein
LOC_Os06g17520Os.45173.1.S1_x_at2/116+10157496..10164259retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27686.1.S1_at--304--4451Chr06:10134535..10134559 (25 bp)
GCCTACAGCCTGCTTGGCGCCGGCC
LOC_Os06g17470
OsAffx.27686.1.S1_at--455--9174Chr06:23036268..23036287 (20 bp)
TGCCCGCCGCCGGATGGGAGTAGAG
NONE
OsAffx.27686.1.S1_at--235--6033Chr09:5319452..5319475 (23 bp)
GAGAGGCTGGATCGGATCTGAGGGA
NONE
OsAffx.27686.1.S1_at--807--6591Chr06:10134420..10134444 (25 bp)
GTTGGAGAGGAGCTATATCTTAGGG
LOC_Os06g17470
OsAffx.27686.1.S1_at--1088--10851Chr06:10134391..10134415 (25 bp)
TTGGAGAGGCGCGATCTTATCTCTA
LOC_Os06g17470
OsAffx.27686.1.S1_at--473--8052Chr08:19222914..19222999 (25 bp)
GGAGAGGCGCGATCTTATCTCTAAA
NONE
OsAffx.27686.1.S1_at--160--6032Chr08:19222913..19222998 (25 bp)
GAGAGGCGCGATCTTATCTCTAAAT
NONE
OsAffx.27686.1.S1_at--899--6213Chr06:23035931..23036403 (25 bp)
GAGGCGCGATCTTATCTCTAAATAT
NONE
OsAffx.27686.1.S1_at--956--8391Chr06:10134384..10134408 (25 bp)
GGCGCGATCTTATCTCTAAATATAT
LOC_Os06g17470
OsAffx.27686.1.S1_at--323--231Chr06:10134365..10134389 (25 bp)
ATATATTTAGTCTGGGACTTAGCCG
LOC_Os06g17470
OsAffx.27686.1.S1_at--880--151Chr06:10134361..10134385 (25 bp)
ATTTAGTCTGGGACTTAGCCGATCA
LOC_Os06g17470
Target Sequence 
GCCTACAGCCTGCTTGGCGCCGGCCGCCTGCCCGCCGCCGGATGGGAGTAGAGGGGAGGAGGAAGGGGAGAAGGGGAGGA
GGGGAGGAGAGGCTGGATCGGATCTGAGGGAGGGAGTTGGAGAGGAGCTATATCTTAGGGGGAGTTGGAGAGGCGCGATC
TTATCTCTAAATATATTTAGTCTGGGACTTAGCCGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis