Browse Element(s) Details


Os.49538.1.S1_at

Description gb:AK099948.1
DB_XREF= gi:32985157
TID=Os.49538.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49538 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123D13, full insert sequence.
FL= gb:AK099948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4301010/11H1flk, putative, expressed
LOC_Os02g199901/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42970OsAffx.24317.6.S1_x_at5/113+23917258..23920108transposon protein, putative, unclassified
LOC_Os03g42990NANA3+23931862..23932581hypothetical protein
LOC_Os03g43000NANA3+23935836..23936075expressed protein
LOC_Os03g43010Os.49538.1.S1_at10/113+23943442..23951796H1flk, putative, expressed
LOC_Os03g43020Os.18497.1.S1_at11/113+23953206..23957468prefoldin subunit 4, putative, expressed
LOC_Os03g43030NANA3+23963520..23964414hypothetical protein
LOC_Os03g43040NANA3+23964668..23968115retrotransposon protein, putative, unclassified
LOC_Os03g43050OsAffx.13315.1.S1_at11/113+23969083..23970205hypothetical protein
LOC_Os03g43060OsAffx.13387.2.S1_at11/113+23972905..23977702F-box domain containing protein
LOC_Os03g43060OsAffx.13387.3.S1_x_at1/113+23972905..23977702F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49538.1.S1_at--298--1951Chr03:23951329..23951353 (25 bp)
ACGGCGCGCGGCTGTACAGCACCAA
LOC_Os03g43010
Os.49538.1.S1_at--1120--7471Chr03:23951445..23951469 (25 bp)
GTGGGCGGCCTCAACGAGAACGCCA
LOC_Os03g43010
Os.49538.1.S1_at--705--4211Chr03:23951557..23951581 (25 bp)
CCGACATCCAGAGGGAGCTCCGGGA
LOC_Os03g43010
Os.49538.1.S1_at--1104--9251Chr03:23951575..23951599 (25 bp)
TCCGGGAGGCCTTCCGCTCCGTGGA
LOC_Os03g43010
Os.49538.1.S1_at--700--4511Chr03:23951609..23951633 (25 bp)
GCCGAACACCAATGGCGCCTAGATA
LOC_Os03g43010
Os.49538.1.S1_at--26--2971Chr03:23951619..23951643 (25 bp)
AATGGCGCCTAGATATGGTGTGTGT
LOC_Os03g43010
Os.49538.1.S1_at--345--8671Chr03:23951641..23951665 (25 bp)
TGTGTGTTCAATATGTTTCCCCAGA
LOC_Os03g43010
Os.49538.1.S1_at--1131--6831Chr03:23951655..23951679 (25 bp)
GTTTCCCCAGAAATTAATCATGTGG
LOC_Os03g43010
Os.49538.1.S1_at--1019--2291Chr03:23951729..23951753 (25 bp)
AAATGGATGTGCTTATTATATGAAC
LOC_Os03g43010
Os.49538.1.S1_at--767--151Chr03:23951743..23951767 (25 bp)
ATTATATGAACTAGTAGGGTGGCCC
LOC_Os03g43010
Os.49538.1.S1_at--80--4573Chr03:23951776..23951800 (25 bp)
GCGCGGCTAGCATCCATAAAAAAAT
NONE
Target Sequence 
ACGGCGCGCGGCTGTACAGCACCAACACCATGGGCGCGGCGCGGCTGATCGCGCGCAAGGACGGCGTCGCCGGCAGCCTG
CTGGTGGAGCCGGCGGAGTTCGCGTGCCTCGACGCGGTGGGCGGCCTCAACGAGAACGCCACCGGGGTGCACGACCTCTA
CCGCGGCGGCGCCACCGCCTGCGGCGCCCGCTCCATCTGGGACGACATGATCGCCTCGCCGGCGCGCGCCGACATCCAGA
GGGAGCTCCGGGAGGCCTTCCGCTCCGTGGAGCACGCGCCGCCGAACACCAATGGCGCCTAGATATGGTGTGTGTGTGTT
CAATATGTTTCCCCAGAAATTAATCATGTGGGGAACTAAATTTGTTGTTGATGTGTAAAGGGAGTGTATTAATTTGTGGT
AAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCNCGCAATTGCGCGGCTAGCATCCATAAAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis