Browse Element(s) Details


OsAffx.13387.3.S1_x_at

Description tigr:9631.m04176
TID=OsAffx.13387.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g433309/11hypothetical protein
LOC_Os03g473601/11hypothetical protein
LOC_Os03g430601/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43280Os.45976.1.S1_x_at5/113+24084169..24087861transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43290Os.46306.1.S1_x_at4/113+24090242..24094588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43309OsAffx.28736.2.S1_at10/113+24097420..24099895hypothetical protein
LOC_Os03g43309OsAffx.31510.1.S1_at1/113+24097420..24099895hypothetical protein
LOC_Os03g43309Os.36476.1.S1_at1/113+24097420..24099895hypothetical protein
LOC_Os03g43309OsAffx.27681.1.S1_x_at1/113+24097420..24099895hypothetical protein
LOC_Os03g43330OsAffx.13387.3.S1_x_at9/113+24108594..24111062hypothetical protein
LOC_Os03g43330OsAffx.13387.3.S1_at8/113+24108594..24111062hypothetical protein
LOC_Os03g43340OsAffx.22604.1.S1_x_at2/113+24114851..24116388hypothetical protein
LOC_Os03g43350OsAffx.25511.1.S1_at11/113+24123273..24125821hypothetical protein
LOC_Os03g43360OsAffx.13323.1.S1_at11/113+24128721..24134539Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13387.3.S1_x_at--502--4631Chr03:24108951..24108975 (25 bp)
GCGATGACGATCTCGGCGACGATGA
LOC_Os03g43330
OsAffx.13387.3.S1_x_at--1138--4691NONE
GCGGCGACCTCGGAATATCCTTGTC
NONE
OsAffx.13387.3.S1_x_at--1069--5811NONE
GACCTCGGAATATCCTTGTCGAATA
NONE
OsAffx.13387.3.S1_x_at--75--531Chr03:24110744..24110768 (25 bp)
ATCCTTGTCGAATAACAAGCACCAA
LOC_Os03g43330
OsAffx.13387.3.S1_x_at--1072--3331Chr03:24110763..24110787 (25 bp)
CACCAAGTACTTGAGTTACCGATGA
LOC_Os03g43330
OsAffx.13387.3.S1_x_at--886--7011Chr03:24110769..24110793 (25 bp)
GTACTTGAGTTACCGATGAATACTA
LOC_Os03g43330
OsAffx.13387.3.S1_x_at--668--6051Chr03:24110775..24110799 (25 bp)
GAGTTACCGATGAATACTAAAGTAT
LOC_Os03g43330
OsAffx.13387.3.S1_x_at--438--7071Chr03:24110800..24110824 (25 bp)
GTCAATATATAAACCATTTTGTCGG
LOC_Os03g43330
OsAffx.13387.3.S1_x_at--932--10171Chr03:24110807..24110831 (25 bp)
TATAAACCATTTTGTCGGAAGATCA
LOC_Os03g43330
OsAffx.13387.3.S1_x_at--398--9391Chr03:24110857..24110881 (25 bp)
TCGATATTGAGCACCGACTACGGGT
LOC_Os03g43330
OsAffx.13387.3.S1_x_at--1097--5693Chr03:24110872..24110896 (25 bp)
GACTACGGGTTTGGTTCCTCAATGA
LOC_Os03g43330
Target Sequence 
GCGATGACGATCTCGGCGACGATGACGGCGGCGGGCGGCGGCGGCGACCTCGGAATATCCTTGTCGAATAACAAGCACCA
AGTACTTGAGTTACCGATGAATACTAAAGTATGTCAATATATAAACCATTTTGTCGGAAGATCAATGAGGGGTGTGCACT
ATGCATTAATCGATATTGAGCACCGACTACGGGTTTGGTTCCTCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13387.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis