Browse Element(s) Details


Os.36476.1.S1_at

Description gb:NM_190457.1
DB_XREF= gi:34907997
GEN=P0460C04.8
TID=Os.36476.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0460C04.8 (P0460C04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0460C04.8 (P0460C04.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g202803/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g183201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g433091/11hypothetical protein
LOC_Os06g312001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g409401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g549201/11hypothetical protein
LOC_Os05g314001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20210NANA7+11659606..11663784retrotransposon protein, putative, unclassified
LOC_Os07g20220NANA7+11664689..11665069hypothetical protein
LOC_Os07g20230NANA7+11667662..11668678retrotransposon protein, putative, unclassified
LOC_Os07g20240Os.38395.3.S1_x_at11/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g20240Os.38395.2.S1_x_at9/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g20240Os.38395.4.S1_x_at2/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g20240Os.38395.1.S1_at1/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g20250NANA7+11672636..11674180retrotransposon protein, putative, unclassified
LOC_Os07g20260Os.54774.1.S1_at2/117+11677029..11678388hypothetical protein
LOC_Os07g20260Os.54774.1.S1_x_at2/117+11677029..11678388hypothetical protein
LOC_Os07g20270Os.53280.1.S1_at11/117+11683053..11685569expressed protein
LOC_Os07g20280Os.36476.1.S1_at3/117+11688435..11695221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g20280OsAffx.11386.1.S1_x_at1/117+11688435..11695221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g20280OsAffx.4856.1.S1_x_at1/117+11688435..11695221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g20280OsAffx.26607.2.S1_at1/117+11688435..11695221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g20290NANA7+11703061..11703297hypothetical protein
LOC_Os07g20300NANA7+11710779..11712168Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36476.1.S1_at--391--4251Chr01:35975051..35975075 (25 bp)
CCGGTGTACATGTTGGGCCTACATT
NONE
Os.36476.1.S1_at--1112--10831Chr01:35975039..35975063 (25 bp)
TTGGGCCTACATTTCGGCCCTCAAT
NONE
Os.36476.1.S1_at--609--8411Chr01:35975024..35975048 (25 bp)
GGCCCTCAATTAAGGCAGGTCCGCA
NONE
Os.36476.1.S1_at--1030--5011Chr01:35974584..35975034 (25 bp)
GCAGGTCCGCAAGTGCACTGATAAC
NONE
Os.36476.1.S1_at--52--5191Chr01:35974576..35975026 (25 bp)
GCAAGTGCACTGATAACTCTCAATT
NONE
Os.36476.1.S1_at--643--6511Chr01:35974539..35974563 (25 bp)
GATATACATGATCCGGTTTCCAATT
NONE
Os.36476.1.S1_at--668--711Chr01:35974532..35974556 (25 bp)
ATGATCCGGTTTCCAATTGATGAGG
NONE
Os.36476.1.S1_at--43--2397Chr06:20066168..20066191 (24 bp)
AAACGCATCCAGTCTCATGTCCAAT
NONE
Os.36476.1.S1_at--823--4976Chr06:20066172..20066191 (20 bp)
GCATCCAGTCTCATGTCCAATTCAT
NONE
Os.36476.1.S1_at--638--3035Chr08:26822116..26822135 (20 bp)
AATCGCCAAAATAAGACAGTGTTGT
NONE
Os.36476.1.S1_at--802--75552Chr12:7751670..7751694 (25 bp)
GGGCCTTGGGCCTTGTAATAGACTA
NONE
Target Sequence 
CCGGTGTACATGTTGGGCCTACATTTCGGCCCTCAATTAAGGCAGGTCCGCAAGTGCACTGATAACTCTCAATTTGGTGG
AAACTTGATATACATGATCCGGTTTCCAATTGATGAGGACATCACTTTGTCGGATACGCTCATAACTTCACATGTTCCAA
TGATAATTCCAAGTCCAAGTCCAGTTCGGCCTTCGGAGACAGTACTGACTTCAAATGGACCTAGCGTCTTCATGCCAACT
CCGATTTGGGTGATCTTGGACTTCGTGGAAAGCTTATCTCGCTACCTTTCAAACGCATCCAGTCTCATGTCCAATTCATC
TCAAGTCAACGGGAATCGCCAAAATAAGACAGTGTTGTTGCTGAAACCGAACTTGGGCCTTGGGCCTTGTAATAGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis