Browse Element(s) Details


OsAffx.4856.1.S1_x_at

Description tigr:9634.m01719
TID=OsAffx.4856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1705011/11hypothetical protein
LOC_Os06g170704/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g254603/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g158501/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g432101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g094101/11retrotransposon protein, putative, LINE subclass
LOC_Os05g105101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g094001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g202801/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g120101/11retrotransposon protein, putative, unclassified
LOC_Os11g145601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g287601/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17020OsAffx.15467.1.S1_at3/116+9869712..9871353UDP-glycosyltransferase 89B2, putative, expressed
LOC_Os06g17030OsAffx.27348.1.S1_x_at1/116+9875078..9878342transposon protein, putative, unclassified, expressed
LOC_Os06g17040NANA6+9878981..9885328retrotransposon protein, putative, unclassified
LOC_Os06g17050OsAffx.4856.1.S1_at11/116+9888300..9888719hypothetical protein
LOC_Os06g17050OsAffx.4856.1.S1_x_at11/116+9888300..9888719hypothetical protein
LOC_Os06g17050OsAffx.11386.1.S1_x_at1/116+9888300..9888719hypothetical protein
LOC_Os06g17060NANA6+9889633..9890998retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070OsAffx.4856.1.S1_x_at4/116+9891374..9894169retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070OsAffx.4856.1.S1_at3/116+9891374..9894169retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070OsAffx.19821.1.S1_at2/116+9891374..9894169retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070OsAffx.19821.1.S1_x_at2/116+9891374..9894169retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070OsAffx.11386.1.S1_x_at1/116+9891374..9894169retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17080OsAffx.27681.1.S1_x_at10/116+9903101..9904591hypothetical protein
LOC_Os06g17080OsAffx.27681.1.S1_at10/116+9903101..9904591hypothetical protein
LOC_Os06g17090OsAffx.15468.1.S1_at10/116+9909739..9910845UDP-glycosyltransferase 89B2, putative
LOC_Os06g17100OsAffx.7916.1.S1_at1/116+9910973..9915273retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17100Os.54806.1.S1_at1/116+9910973..9915273retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4856.1.S1_x_at--378--8134Chr12:14728937..14729017 (25 bp)
GGACATTCTCGGGTCGCAATTCTAT
LOC_Os12g25460
OsAffx.4856.1.S1_x_at--1021--5674Chr12:14728938..14729018 (25 bp)
GACATTCTCGGGTCGCAATTCTATT
LOC_Os12g25460
OsAffx.4856.1.S1_x_at--971--2074Chr12:14728939..14729019 (25 bp)
ACATTCTCGGGTCGCAATTCTATTG
LOC_Os12g25460
OsAffx.4856.1.S1_x_at--50--5211Chr06:9888385..9888518 (25 bp)
GCAATTCTATTGCATTCTTGATTAA
LOC_Os06g17050
OsAffx.4856.1.S1_x_at--346--10732Chr12:14732366..14732498 (24 bp)
TTGCATTCTTGATTAAAATATGCCG
NONE
OsAffx.4856.1.S1_x_at--864--5930Chr12:4925221..4925245 (25 bp)
ATGCCGATATATGACTATATTTCCA
LOC_Os12g09400
OsAffx.4856.1.S1_x_at--713--10191Chr06:9888340..9888364 (25 bp)
TATTTCCAACAATGAGAACCTACTG
LOC_Os06g17050
OsAffx.4856.1.S1_x_at--807--10651Chr06:9888337..9888361 (25 bp)
TTCCAACAATGAGAACCTACTGGCT
LOC_Os06g17050
OsAffx.4856.1.S1_x_at--853--2452Chr12:14718439..14718932 (25 bp)
AACAATGAGAACCTACTGGCTGCTG
NONE
OsAffx.4856.1.S1_x_at--797--2231Chr06:9888332..9888356 (25 bp)
ACAATGAGAACCTACTGGCTGCTGG
LOC_Os06g17050
OsAffx.4856.1.S1_x_at--1039--2991Chr06:9888330..9888354 (25 bp)
AATGAGAACCTACTGGCTGCTGGCA
LOC_Os06g17050
Target Sequence 
GGACATTCTCGGGTCGCAATTCTATTGCATTCTTGATTAAAATATGCCGATATATGACTATATTTCCAACAATGAGAACC
TACTGGCTGCTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4856.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis