Browse Element(s) Details

OsAffx.15467.1.S1_at

Description

tigr:9634.m01715
TID=OsAffx.15467.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g17020	3/11	UDP-glycosyltransferase 89B2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16980	Os.20056.1.A1_at	11/11	6	+	9839889..9855981	DNA topoisomerase I family protein, expressed
LOC_Os06g16980	OsAffx.24454.2.S1_x_at	2/11	6	+	9839889..9855981	DNA topoisomerase I family protein, expressed
LOC_Os06g16980	Os.7779.1.S2_x_at	2/11	6	+	9839889..9855981	DNA topoisomerase I family protein, expressed
LOC_Os06g16990	OsAffx.15465.1.S1_at	11/11	6	+	9856524..9857170	hypothetical protein
LOC_Os06g17000	Os.51972.1.S1_at	11/11	6	+	9860879..9862939	BURP domain containing protein, expressed
LOC_Os06g17000	OsAffx.4876.1.S1_x_at	1/11	6	+	9860879..9862939	BURP domain containing protein, expressed
LOC_Os06g17020	OsAffx.15467.1.S1_at	3/11	6	+	9869712..9871353	UDP-glycosyltransferase 89B2, putative, expressed
LOC_Os06g17030	OsAffx.27348.1.S1_x_at	1/11	6	+	9875078..9878342	transposon protein, putative, unclassified, expressed
LOC_Os06g17040	NA	NA	6	+	9878981..9885328	retrotransposon protein, putative, unclassified
LOC_Os06g17050	OsAffx.4856.1.S1_at	11/11	6	+	9888300..9888719	hypothetical protein
LOC_Os06g17050	OsAffx.4856.1.S1_x_at	11/11	6	+	9888300..9888719	hypothetical protein
LOC_Os06g17050	OsAffx.11386.1.S1_x_at	1/11	6	+	9888300..9888719	hypothetical protein
LOC_Os06g17060	NA	NA	6	+	9889633..9890998	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070	OsAffx.4856.1.S1_x_at	4/11	6	+	9891374..9894169	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070	OsAffx.4856.1.S1_at	3/11	6	+	9891374..9894169	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070	OsAffx.19821.1.S1_at	2/11	6	+	9891374..9894169	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070	OsAffx.19821.1.S1_x_at	2/11	6	+	9891374..9894169	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g17070	OsAffx.11386.1.S1_x_at	1/11	6	+	9891374..9894169	retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0008194	molecular_function	UDP-glycosyltransferase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups
GO:0016758	molecular_function	transferase activity, transferring hexosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15467.1.S1_at--27--765	1	NONE	GGGAGCTCTTGCATCGTGTCGAAAC	NONE
OsAffx.15467.1.S1_at--1112--807	1	NONE	GGAGCTCTTGCATCGTGTCGAAACA	NONE
OsAffx.15467.1.S1_at--91--159	1	NONE	AGCTCTTGCATCGTGTCGAAACAGG	NONE
OsAffx.15467.1.S1_at--54--959	1	NONE	TCTTGCATCGTGTCGAAACAGGCTT	NONE
OsAffx.15467.1.S1_at--1162--905	1	NONE	TGCATCGTGTCGAAACAGGCTTCGG	NONE
OsAffx.15467.1.S1_at--128--355	1	NONE	CATCGTGTCGAAACAGGCTTCGGGA	NONE
OsAffx.15467.1.S1_at--675--939	1	NONE	TCGTGTCGAAACAGGCTTCGGGAGC	NONE
OsAffx.15467.1.S1_at--451--587	1	NONE	GAGCGGACGGGTACGGCGTTCTTCT	NONE
OsAffx.15467.1.S1_at--547--103	1	Chr06:9870269..9870293 (25 bp)	AGGTGCCCGTGCTGCGGCACCGGGC	LOC_Os06g17020
OsAffx.15467.1.S1_at--987--465	1	Chr06:9870246..9870270 (25 bp)	GCGGTGGGACGGTTCGTGACCCACT	LOC_Os06g17020
OsAffx.15467.1.S1_at--1039--393	1	Chr06:9870020..9870044 (25 bp)	CGGCGGCTAGCGAGTGGAGCGAGGT	LOC_Os06g17020

Target Sequence

GGGAGCTCTTGCATCGTGTCGAAACAGGCTTCGGGAGCATGGGGGGCCTGCAGCCGCCTCACGCGGCGGCGCTGGCGGCG
GCGCTGGAGCGGACGGGTACGGCGTTCTTCTGGGCCGCCGGGTCGCACGCGGCGGGGGGGCTCCCGGAGGGGTTCAAGGA
GCGCGCGGCGGCGGGCGGCAAGGGCAAGGTGATCCGCGGGTGGACGCCGCAGGTGCCCGTGCTGCGGCACCGGGCGGTGG
GACGGTTCGTGACCCACTGCGGGTGGAACTCCGTGCTGGAGGCGGTGGCCGCCGGGGTGGCCATGCTGACGTGGCCGATG
ACGGCCGACCAGTTCGTGAACGCGCGGGTGCTCGTCGACGAGCACCGCGCCGCCGTGCCGGGCTCCTGGGGCGGCATCGC
GGTGCCGCCGAGCGCCGACGAGGTGGCGCGCGTGTTCGAGGCGACCTCTGCGGCGGCGGCGGCGGCTAGCGAGTGGAGCG
AGGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis