Browse Element(s) Details


OsAffx.27348.1.S1_x_at

Description tigr:9633.m04414
TID=OsAffx.27348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4693011/11hypothetical protein
LOC_Os09g281802/11D-mannose binding lectin family protein, expressed
LOC_Os06g170301/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46890Os.5308.1.S1_at11/115+27055830..27058840expressed protein
LOC_Os05g46900OsAffx.15133.1.S1_at11/115+27060894..27061094hypothetical protein
LOC_Os05g46910Os.20602.2.S1_x_at9/115+27063851..27066026hAT family dimerisation domain containing protein
LOC_Os05g46920Os.50535.1.S1_at8/115+27067343..27070431expressed protein
LOC_Os05g46930OsAffx.27348.1.S1_x_at11/115+27077743..27078144hypothetical protein
LOC_Os05g46940OsAffx.27349.1.S1_at11/115+27078591..27079794hypothetical protein
LOC_Os05g46950Os.7382.1.S1_at10/115+27080004..27083564expressed protein
LOC_Os05g46950OsAffx.15134.1.S1_s_at10/115+27080004..27083564expressed protein
LOC_Os05g47442Os.53556.1.S1_at11/115+27094745..27095344expressed protein
LOC_Os05g47446Os.12289.1.S1_at10/115+27095954..27100503Double-stranded DNA-binding domain containing protein, expressed
LOC_Os05g47450OsAffx.20387.1.S1_x_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47450OsAffx.10632.1.S1_at1/115+27103088..27109143retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27348.1.S1_x_at--1079--411Chr05:27077890..27077914 (25 bp)
ATCATCATACCAGCAGGCATGCCGA
LOC_Os05g46930
OsAffx.27348.1.S1_x_at--361--3571Chr05:27077895..27077919 (25 bp)
CATACCAGCAGGCATGCCGACGAGG
LOC_Os05g46930
OsAffx.27348.1.S1_x_at--907--571Chr05:27077908..27077932 (25 bp)
ATGCCGACGAGGTTTAGCTTCCAGG
LOC_Os05g46930
OsAffx.27348.1.S1_x_at--589--6052Chr05:27077932..27077956 (25 bp)
GAGATTACAACGATGACCTCCAATT
LOC_Os05g46930
OsAffx.27348.1.S1_x_at--1097--9191Chr05:27077950..27077974 (25 bp)
TCCAATTTCGCGACAAAGGTGAGAA
LOC_Os05g46930
OsAffx.27348.1.S1_x_at--562--10291Chr05:27077955..27077979 (25 bp)
TTTCGCGACAAAGGTGAGAACAGGC
LOC_Os05g46930
OsAffx.27348.1.S1_x_at--325--5491Chr05:27077972..27077996 (25 bp)
GAACAGGCGGGTTCGGCACAGTGTA
LOC_Os05g46930
OsAffx.27348.1.S1_x_at--58--7651Chr05:27078002..27078026 (25 bp)
GGGAGCTTCCAATGGCGCGGCGAGG
LOC_Os05g46930
OsAffx.27348.1.S1_x_at--1070--8313Chr06:9877124..9877303 (25 bp)
GGCTCATCGCCGTGAAAAAGCTCGA
LOC_Os06g17030
OsAffx.27348.1.S1_x_at--645--2431Chr05:27078042..27078066 (25 bp)
AAAAGCTCGAGGCTATCGAGCTGAA
LOC_Os05g46930
OsAffx.27348.1.S1_x_at--503--3791Chr05:27078047..27078071 (25 bp)
CTCGAGGCTATCGAGCTGAAGGGAA
LOC_Os05g46930
Target Sequence 
ATCATCATACCAGCAGGCATGCCGACGAGGTTTAGCTTCCAGGAGATTACAACGATGACCTCCAATTTCGCGACAAAGGT
GAGAACAGGCGGGTTCGGCACAGTGTACAAAGGGGAGCTTCCAATGGCGCGGCGAGGGGCTCATCGCCGTGAAAAAGCTC
GAGGCTATCGAGCTGAAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27348.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis