Browse Element(s) Details


Os.7382.1.S1_at

Description gb:AK102181.1
DB_XREF= gi:32987390
TID=Os.7382.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086M06, full insert sequence.
FL= gb:AK102181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4695010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46890Os.5308.1.S1_at11/115+27055830..27058840expressed protein
LOC_Os05g46900OsAffx.15133.1.S1_at11/115+27060894..27061094hypothetical protein
LOC_Os05g46910Os.20602.2.S1_x_at9/115+27063851..27066026hAT family dimerisation domain containing protein
LOC_Os05g46920Os.50535.1.S1_at8/115+27067343..27070431expressed protein
LOC_Os05g46930OsAffx.27348.1.S1_x_at11/115+27077743..27078144hypothetical protein
LOC_Os05g46940OsAffx.27349.1.S1_at11/115+27078591..27079794hypothetical protein
LOC_Os05g46950Os.7382.1.S1_at10/115+27080004..27083564expressed protein
LOC_Os05g46950OsAffx.15134.1.S1_s_at10/115+27080004..27083564expressed protein
LOC_Os05g47442Os.53556.1.S1_at11/115+27094745..27095344expressed protein
LOC_Os05g47446Os.12289.1.S1_at10/115+27095954..27100503Double-stranded DNA-binding domain containing protein, expressed
LOC_Os05g47450OsAffx.20387.1.S1_x_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47450OsAffx.10632.1.S1_at1/115+27103088..27109143retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7382.1.S1_at--748--9111NONE
TGCTGATGCTTGAGGTCCGGAAAGA
NONE
Os.7382.1.S1_at--272--7451Chr05:27080280..27080304 (25 bp)
GTGTCAACTGAATGCATGGCTTGGA
LOC_Os05g46950
Os.7382.1.S1_at--488--851Chr05:27080265..27080289 (25 bp)
ATGGCTTGGAATGCTCCACGACGAT
LOC_Os05g46950
Os.7382.1.S1_at--294--1571Chr05:27080231..27080255 (25 bp)
AGCTAGCTAGCGTCTTCTTTATGTT
LOC_Os05g46950
Os.7382.1.S1_at--11--6671Chr05:27080206..27080230 (25 bp)
GTTGACTACTTGTTCATTCTGGAAT
LOC_Os05g46950
Os.7382.1.S1_at--193--3031Chr05:27080184..27080208 (25 bp)
AATGCTGTTACGGTTGTTCTTTTGT
LOC_Os05g46950
Os.7382.1.S1_at--1057--6631Chr05:27080155..27080179 (25 bp)
GTTGTCACACCTGCATCTGCAATTA
LOC_Os05g46950
Os.7382.1.S1_at--778--3131Chr05:27080135..27080159 (25 bp)
AATTACTCCCCTATGAGGCAGTCGT
LOC_Os05g46950
Os.7382.1.S1_at--382--6191Chr05:27080121..27080145 (25 bp)
GAGGCAGTCGTTATTCCATTGTTTA
LOC_Os05g46950
Os.7382.1.S1_at--6--9191Chr05:27080107..27080131 (25 bp)
TCCATTGTTTATTAGTAGGCCGATC
LOC_Os05g46950
Os.7382.1.S1_at--1039--1151Chr05:27080078..27080102 (25 bp)
AGTCACATATGATCGGTCAGTCCCG
LOC_Os05g46950
Target Sequence 
TGCTGATGCTTGAGGTCCGGAAAGAAGAGAGAGACTTGAAAGACGAGAATTGCTGACGACTGGAGGAGAGGTGACGCTGC
TGTATGTGGGGGAAGAATCTATCAAGTATCAAGTGTCAACTGAATGCATGGCTTGGAATGCTCCACGACGATTGGAAGAT
TAGCTAGCTAGCGTCTTCTTTATGTTGTTGACTACTTGTTCATTCTGGAATGCTGTTACGGTTGTTCTTTTGTTGTTGTT
GTCACACCTGCATCTGCAATTACTCCCCTATGAGGCAGTCGTTATTCCATTGTTTATTAGTAGGCCGATCGGTCAGTCAC
ATATGATCGGTCAGTCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis