Browse Element(s) Details


Os.50535.1.S1_at

Description gb:AK121657.1
DB_XREF= gi:37991280
TID=Os.50535.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033063G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033063G18, full insert sequence.
FL= gb:AK121657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g469208/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46860OsAffx.15132.1.S1_at11/115+27042409..27043990Smad nuclear interacting protein 1, putative
LOC_Os05g46874OsAffx.4644.1.S1_at11/115+27046488..27051554hypothetical protein
LOC_Os05g46874OsAffx.27347.1.S1_at11/115+27046488..27051554hypothetical protein
LOC_Os05g46890Os.5308.1.S1_at11/115+27055830..27058840expressed protein
LOC_Os05g46900OsAffx.15133.1.S1_at11/115+27060894..27061094hypothetical protein
LOC_Os05g46910Os.20602.2.S1_x_at9/115+27063851..27066026hAT family dimerisation domain containing protein
LOC_Os05g46920Os.50535.1.S1_at8/115+27067343..27070431expressed protein
LOC_Os05g46930OsAffx.27348.1.S1_x_at11/115+27077743..27078144hypothetical protein
LOC_Os05g46940OsAffx.27349.1.S1_at11/115+27078591..27079794hypothetical protein
LOC_Os05g46950Os.7382.1.S1_at10/115+27080004..27083564expressed protein
LOC_Os05g46950OsAffx.15134.1.S1_s_at10/115+27080004..27083564expressed protein
LOC_Os05g47442Os.53556.1.S1_at11/115+27094745..27095344expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50535.1.S1_at--436--8931Chr05:27068914..27068938 (25 bp)
TGACGAATACTGCTGTTCCCCAAGT
LOC_Os05g46920
Os.50535.1.S1_at--42--4391Chr05:27068933..27068957 (25 bp)
CCAAGTACTGTACGCTGGTGCTTAA
LOC_Os05g46920
Os.50535.1.S1_at--62--5971NONE
GAGAATGCTTTCTCACTGGCACTAT
NONE
Os.50535.1.S1_at--766--3911NONE
CTGGCACTATCGATCGGCTAGATGT
NONE
Os.50535.1.S1_at--733--5471Chr05:27069920..27069944 (25 bp)
GAACTCTTGAATGCCTGATGCTTGA
LOC_Os05g46920
Os.50535.1.S1_at--377--10791Chr05:27069941..27069965 (25 bp)
TTGATCAGTGTGTCCTACCAGGCAT
LOC_Os05g46920
Os.50535.1.S1_at--425--10851Chr05:27070026..27070050 (25 bp)
TTGGCAATTCGGCATACATACTACT
LOC_Os05g46920
Os.50535.1.S1_at--732--2911Chr05:27070053..27070077 (25 bp)
AAGGACGGTCCTTCCAGGCGTGACA
LOC_Os05g46920
Os.50535.1.S1_at--222--911Chr05:27070068..27070092 (25 bp)
AGGCGTGACATCTCCATGTTCCAGA
LOC_Os05g46920
Os.50535.1.S1_at--970--1391Chr05:27070134..27070158 (25 bp)
AGACATTTGGTGCTTTCCCATTCAC
LOC_Os05g46920
Os.50535.1.S1_at--449--2711NONE
AAGCATACCCCTTTGTAGTTGAGAA
NONE
Target Sequence 
TGACGAATACTGCTGTTCCCCAAGTACTGTACGCTGGTGCTTAATGAGAATGCTTTCTCACTGGCACTATCGATCGGCTA
GATGTTCTTGAACTCTTGAATGCCTGATGCTTGATCAGTGTGTCCTACCAGGCATGATATCTCCAGAGTTCAGATTTGCT
TCTTGTGAATACTGGCTAAGTAAAACTGGTAACTATTGGCAATTCGGCATACATACTACTGAAAGGACGGTCCTTCCAGG
CGTGACATCTCCATGTTCCAGAATTTTTTTGTGTGTTTTCACTAACAAAGGCGGTTATTCTTTAGACATTTGGTGCTTTC
CCATTCACCACCGCATGGATCTTTTGATATACTATGCAGGTAACTAACAGCACAGGCAATTATATTCTGCTCTTTCAAGA
TTTTAGAATGATCATGTCCTTTAGTTTGTATTTTTTGCATGTACCATACGATTGATCAGGCTAAAAAAGCATACCCCTTT
GTAGTTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis