Browse Element(s) Details


OsAffx.15133.1.S1_at

Description tigr:9633.m04411
TID=OsAffx.15133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4690011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46830Os.55674.1.S1_at11/115+27035850..27037053expressed protein
LOC_Os05g46840Os.55984.1.S1_at11/115+27038710..27039629expressed protein
LOC_Os05g46860OsAffx.15132.1.S1_at11/115+27042409..27043990Smad nuclear interacting protein 1, putative
LOC_Os05g46874OsAffx.4644.1.S1_at11/115+27046488..27051554hypothetical protein
LOC_Os05g46874OsAffx.27347.1.S1_at11/115+27046488..27051554hypothetical protein
LOC_Os05g46890Os.5308.1.S1_at11/115+27055830..27058840expressed protein
LOC_Os05g46900OsAffx.15133.1.S1_at11/115+27060894..27061094hypothetical protein
LOC_Os05g46910Os.20602.2.S1_x_at9/115+27063851..27066026hAT family dimerisation domain containing protein
LOC_Os05g46920Os.50535.1.S1_at8/115+27067343..27070431expressed protein
LOC_Os05g46930OsAffx.27348.1.S1_x_at11/115+27077743..27078144hypothetical protein
LOC_Os05g46940OsAffx.27349.1.S1_at11/115+27078591..27079794hypothetical protein
LOC_Os05g46950Os.7382.1.S1_at10/115+27080004..27083564expressed protein
LOC_Os05g46950OsAffx.15134.1.S1_s_at10/115+27080004..27083564expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15133.1.S1_at--834--6911Chr05:27060926..27060950 (25 bp)
GTATGACGAGGAGTCTTTGACCAGC
LOC_Os05g46900
OsAffx.15133.1.S1_at--539--5771Chr05:27060930..27060954 (25 bp)
GACGAGGAGTCTTTGACCAGCGACT
LOC_Os05g46900
OsAffx.15133.1.S1_at--501--10271Chr05:27060941..27060965 (25 bp)
TTTGACCAGCGACTCCCTGGATGAG
LOC_Os05g46900
OsAffx.15133.1.S1_at--26--5731Chr05:27060951..27060975 (25 bp)
GACTCCCTGGATGAGGCCAACGAGA
LOC_Os05g46900
OsAffx.15133.1.S1_at--377--711Chr05:27060961..27060985 (25 bp)
ATGAGGCCAACGAGAGAGTGCATGT
LOC_Os05g46900
OsAffx.15133.1.S1_at--739--3251Chr05:27060968..27060992 (25 bp)
CAACGAGAGAGTGCATGTGGTCCTG
LOC_Os05g46900
OsAffx.15133.1.S1_at--1024--1331Chr05:27060975..27060999 (25 bp)
AGAGTGCATGTGGTCCTGGACTCCA
LOC_Os05g46900
OsAffx.15133.1.S1_at--753--9051Chr05:27060979..27061003 (25 bp)
TGCATGTGGTCCTGGACTCCATGGA
LOC_Os05g46900
OsAffx.15133.1.S1_at--910--7491Chr05:27060984..27061008 (25 bp)
GTGGTCCTGGACTCCATGGACGCTG
LOC_Os05g46900
OsAffx.15133.1.S1_at--957--9351Chr05:27061033..27061057 (25 bp)
TCGACTCCATGGACGATAGAGCCGG
LOC_Os05g46900
OsAffx.15133.1.S1_at--38--5731Chr05:27061035..27061059 (25 bp)
GACTCCATGGACGATAGAGCCGGCG
LOC_Os05g46900
Target Sequence 
GTATGACGAGGAGTCTTTGACCAGCGACTCCCTGGATGAGGCCAACGAGAGAGTGCATGTGGTCCTGGACTCCATGGACG
CTGCCGGCGATGAAGTGCTCGTGGTCGTCGACTCCATGGACGATAGAGCCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis