Browse Element(s) Details


OsAffx.4644.1.S1_at

Description tigr:9633.m04408
TID=OsAffx.4644.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4687411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46800Os.5308.1.S1_at5/115+27020518..27022416hypothetical protein
LOC_Os05g46810NANA5+27027624..27031523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g46820OsAffx.15131.1.S1_at11/115+27034055..27035050hypothetical protein
LOC_Os05g46830Os.55674.1.S1_at11/115+27035850..27037053expressed protein
LOC_Os05g46840Os.55984.1.S1_at11/115+27038710..27039629expressed protein
LOC_Os05g46860OsAffx.15132.1.S1_at11/115+27042409..27043990Smad nuclear interacting protein 1, putative
LOC_Os05g46874OsAffx.4644.1.S1_at11/115+27046488..27051554hypothetical protein
LOC_Os05g46874OsAffx.27347.1.S1_at11/115+27046488..27051554hypothetical protein
LOC_Os05g46890Os.5308.1.S1_at11/115+27055830..27058840expressed protein
LOC_Os05g46900OsAffx.15133.1.S1_at11/115+27060894..27061094hypothetical protein
LOC_Os05g46910Os.20602.2.S1_x_at9/115+27063851..27066026hAT family dimerisation domain containing protein
LOC_Os05g46920Os.50535.1.S1_at8/115+27067343..27070431expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4644.1.S1_at--75--10631Chr05:27046542..27046566 (25 bp)
TTCGCTCAGCTGTTGCAAGCACGGA
LOC_Os05g46874
OsAffx.4644.1.S1_at--848--2712Chr05:27046558..27046788 (25 bp)
AAGCACGGATGCTAGGAGAAGCCTA
LOC_Os05g46874
OsAffx.4644.1.S1_at--251--971Chr05:27046777..27046801 (25 bp)
AGGAGAAGCCTACTACTCCTATCCA
LOC_Os05g46874
OsAffx.4644.1.S1_at--332--9251Chr05:27046793..27046817 (25 bp)
TCCTATCCACATCGGATCCGGATTA
LOC_Os05g46874
OsAffx.4644.1.S1_at--1036--9411Chr05:27046804..27046828 (25 bp)
TCGGATCCGGATTAAATGCAGTAGT
LOC_Os05g46874
OsAffx.4644.1.S1_at--641--10052Chr12:22904512..22904536 (25 bp)
TAGTAGTATGGACTGCAACTTAAGC
NONE
OsAffx.4644.1.S1_at--923--3251Chr05:27046840..27046864 (25 bp)
CAACTTAAGCAGTTGTAGCTGCTAC
LOC_Os05g46874
OsAffx.4644.1.S1_at--390--6973Chr05:27046854..27046878 (25 bp)
GTAGCTGCTACGTTGGATCTAAATC
LOC_Os05g46874
OsAffx.4644.1.S1_at--788--7931Chr05:27046868..27047024 (25 bp)
GGATCTAAATCCAACGTCCCTAAGA
LOC_Os05g46874
OsAffx.4644.1.S1_at--438--9831Chr05:27046873..27047029 (25 bp)
TAAATCCAACGTCCCTAAGACTGCA
LOC_Os05g46874
OsAffx.4644.1.S1_at--551--451Chr05:27047034..27047058 (25 bp)
ATCTCAATCCATCCACATCTTCGTG
LOC_Os05g46874
Target Sequence 
TTCGCTCAGCTGTTGCAAGCACGGATGCTAGGAGAAGCCTACTACTCCTATCCACATCGGATCCGGATTAAATGCAGTAG
TAGTATGGACTGCAACTTAAGCAGTTGTAGCTGCTACGTTGGATCTAAATCCAACGTCCCTAAGACTGCACCCGATCTCA
ATCCATCCACATCTTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis