Browse Element(s) Details


OsAffx.27349.1.S1_at

Description tigr:9633.m04415
TID=OsAffx.27349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4694011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46890Os.5308.1.S1_at11/115+27055830..27058840expressed protein
LOC_Os05g46900OsAffx.15133.1.S1_at11/115+27060894..27061094hypothetical protein
LOC_Os05g46910Os.20602.2.S1_x_at9/115+27063851..27066026hAT family dimerisation domain containing protein
LOC_Os05g46920Os.50535.1.S1_at8/115+27067343..27070431expressed protein
LOC_Os05g46930OsAffx.27348.1.S1_x_at11/115+27077743..27078144hypothetical protein
LOC_Os05g46940OsAffx.27349.1.S1_at11/115+27078591..27079794hypothetical protein
LOC_Os05g46950Os.7382.1.S1_at10/115+27080004..27083564expressed protein
LOC_Os05g46950OsAffx.15134.1.S1_s_at10/115+27080004..27083564expressed protein
LOC_Os05g47442Os.53556.1.S1_at11/115+27094745..27095344expressed protein
LOC_Os05g47446Os.12289.1.S1_at10/115+27095954..27100503Double-stranded DNA-binding domain containing protein, expressed
LOC_Os05g47450OsAffx.20387.1.S1_x_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47450OsAffx.10632.1.S1_at1/115+27103088..27109143retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27349.1.S1_at--71--6451Chr05:27079209..27079233 (25 bp)
GATCAGGGCCTTTCTCAAGCTGAAT
LOC_Os05g46940
OsAffx.27349.1.S1_at--975--6331Chr05:27079237..27079261 (25 bp)
GATGCTTTTGCGGATGCCATTGAAA
LOC_Os05g46940
OsAffx.27349.1.S1_at--1086--831Chr05:27079274..27079298 (25 bp)
ATGGACCACTTCTAGCTGAGATCGA
LOC_Os05g46940
OsAffx.27349.1.S1_at--732--5951Chr05:27079336..27079360 (25 bp)
GAGCAAGCGGGTATCCTGTCATATG
LOC_Os05g46940
OsAffx.27349.1.S1_at--1078--691Chr05:27079381..27079405 (25 bp)
ATGAGAGTCCATGCAGCGTGTGTTC
LOC_Os05g46940
OsAffx.27349.1.S1_at--524--2971Chr05:27079423..27079447 (25 bp)
AATGTGGTACCGTTCTGGGAGTTCA
LOC_Os05g46940
OsAffx.27349.1.S1_at--642--7651Chr05:27079439..27079463 (25 bp)
GGGAGTTCATCAATTCGTACGGCAA
LOC_Os05g46940
OsAffx.27349.1.S1_at--484--971Chr05:27079491..27079515 (25 bp)
AGTGGTACCCCATAACGTGAGACGC
LOC_Os05g46940
OsAffx.27349.1.S1_at--990--8051Chr05:27079619..27079643 (25 bp)
GGAGACCTCCTGTGACTGATACGGG
LOC_Os05g46940
OsAffx.27349.1.S1_at--372--311Chr05:27079706..27079730 (25 bp)
ATACCATGGACTGGGCTTTCTCTGA
LOC_Os05g46940
OsAffx.27349.1.S1_at--1021--8571Chr05:27079740..27079764 (25 bp)
TGGTTATGGTTCATCTGCCAAGCCG
LOC_Os05g46940
Target Sequence 
GATCAGGGCCTTTCTCAAGCTGAATGCCGATGCTTTTGCGGATGCCATTGAAAGCTGGGGGACTAATGGACCACTTCTAG
CTGAGATCGATGTGGACGAAACATTCATGCAGTATATAATTAAGTTCGAGCAAGCGGGTATCCTGTCATATGAAGCTTAC
AATGAGATCAACATGAGAGTCCATGCAGCGTGTGTTCTCGCGCTGGGCGTGGAGAATGTGGTACCGTTCTGGGAGTTCAT
CAATTCGTACGGCAAGCTTGGGAAGACTAAGGGCTACGGCAGAGTGGTACCCCATAACGTGAGACGCCTATTTGAGATCG
TCGTTGAGGTTCCGAAGAAGAGGGTGAGGGGCATATTCGAGAATACGCCGAGCGACTCCATCGACACCCAAGACTTGCGG
CCTTCCAAGGGGAGACCTCCTGTGACTGATACGGGAGATGTCGTTGTTCCTGTTCTCATGGGCGCAGCCGCTGCCGCTGG
GAATCCATTCCCCACACATACCATGGACTGGGCTTTCTCTGACCCTCCAGATGGTTATGGTTCATCTGCCAAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis