Browse Element(s) Details


OsAffx.15134.1.S1_s_at

Description tigr:9633.m04416
TID=OsAffx.15134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4695010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46890Os.5308.1.S1_at11/115+27055830..27058840expressed protein
LOC_Os05g46900OsAffx.15133.1.S1_at11/115+27060894..27061094hypothetical protein
LOC_Os05g46910Os.20602.2.S1_x_at9/115+27063851..27066026hAT family dimerisation domain containing protein
LOC_Os05g46920Os.50535.1.S1_at8/115+27067343..27070431expressed protein
LOC_Os05g46930OsAffx.27348.1.S1_x_at11/115+27077743..27078144hypothetical protein
LOC_Os05g46940OsAffx.27349.1.S1_at11/115+27078591..27079794hypothetical protein
LOC_Os05g46950Os.7382.1.S1_at10/115+27080004..27083564expressed protein
LOC_Os05g46950OsAffx.15134.1.S1_s_at10/115+27080004..27083564expressed protein
LOC_Os05g47442Os.53556.1.S1_at11/115+27094745..27095344expressed protein
LOC_Os05g47446Os.12289.1.S1_at10/115+27095954..27100503Double-stranded DNA-binding domain containing protein, expressed
LOC_Os05g47450OsAffx.20387.1.S1_x_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47450OsAffx.10632.1.S1_at1/115+27103088..27109143retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15134.1.S1_s_at--755--3891NONE
CTGGAAAACTTTAAGGGCATCTCCT
NONE
OsAffx.15134.1.S1_s_at--82--1091Chr05:27082528..27082552 (25 bp)
AGGGCATCTCCTTTTGAGCTATCAA
LOC_Os05g46950
OsAffx.15134.1.S1_s_at--617--5911Chr05:27082513..27082537 (25 bp)
GAGCTATCAAGAATGGCGTCCCAAA
LOC_Os05g46950
OsAffx.15134.1.S1_s_at--936--351Chr05:27082508..27082532 (25 bp)
ATCAAGAATGGCGTCCCAAAAGCCC
LOC_Os05g46950
OsAffx.15134.1.S1_s_at--233--2971Chr05:27081096..27081117 (22 bp)
AATGGTTCCGTTGATATCTGTGCCC
LOC_Os05g46950
OsAffx.15134.1.S1_s_at--395--6651Chr05:27081087..27081111 (25 bp)
GTTGATATCTGTGCCCATTGCTGGG
LOC_Os05g46950
OsAffx.15134.1.S1_s_at--150--8371Chr05:27081061..27081085 (25 bp)
TGGAATCAGGCATCCAAAGGACGGT
LOC_Os05g46950
OsAffx.15134.1.S1_s_at--1036--3271Chr05:27081047..27081071 (25 bp)
CAAAGGACGGTGGATTTGTTGGCTA
LOC_Os05g46950
OsAffx.15134.1.S1_s_at--797--6611Chr05:27081030..27081054 (25 bp)
GTTGGCTACGTAGGAGCATTGCCTG
LOC_Os05g46950
OsAffx.15134.1.S1_s_at--1054--7571Chr05:27081003..27081027 (25 bp)
GGGCTGACCATTAATCACGCTAACA
LOC_Os05g46950
OsAffx.15134.1.S1_s_at--316--5851Chr05:27080998..27081022 (25 bp)
GACCATTAATCACGCTAACATGCTG
LOC_Os05g46950
Target Sequence 
CTGGAAAACTTTAAGGGCATCTCCTTTTGAGCTATCAAGAATGGCGTCCCAAAAGCCCGAAAAGAAAGGTCCCCCTGAGG
GGGAAGAAAAACCAAATGAGGTCACAATGTGCAAGATTGTCGATAAATACAATGGTTCCGTTGATATCTGTGCCCATTGC
TGGGGTGGAATCAGGCATCCAAAGGACGGTGGATTTGTTGGCTACGTAGGAGCATTGCCTGAGGGGCTGACCATTAATCA
CGCTAACATGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15134.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis