Browse Element(s) Details


Os.20056.1.A1_at

Description gb:AK121044.1
DB_XREF= gi:37990667
TID=Os.20056.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023053F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023053F03, full insert sequence.
FL= gb:AK121044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1698011/11DNA topoisomerase I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16940NANA6+9815571..9817613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16950OsAffx.15464.1.S1_x_at10/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.15464.1.S1_at9/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.2606.1.S1_at2/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.32163.2.S1_at2/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.8939.1.S1_x_at1/116+9821442..9823910hypothetical protein
LOC_Os06g16960OsAffx.27680.1.S1_at10/116+9831188..9833592O-methyltransferase family protein
LOC_Os06g16970OsAffx.4855.1.S1_at11/116+9836651..9837052hypothetical protein
LOC_Os06g16980Os.20056.1.A1_at11/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980OsAffx.24454.2.S1_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980Os.7779.1.S2_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16990OsAffx.15465.1.S1_at11/116+9856524..9857170hypothetical protein
LOC_Os06g17000Os.51972.1.S1_at11/116+9860879..9862939BURP domain containing protein, expressed
LOC_Os06g17000OsAffx.4876.1.S1_x_at1/116+9860879..9862939BURP domain containing protein, expressed
LOC_Os06g17020OsAffx.15467.1.S1_at3/116+9869712..9871353UDP-glycosyltransferase 89B2, putative, expressed
LOC_Os06g17030OsAffx.27348.1.S1_x_at1/116+9875078..9878342transposon protein, putative, unclassified, expressed
LOC_Os06g17040NANA6+9878981..9885328retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006265biological_processDNA topological change
GO:0006268biological_processDNA unwinding during replication
GO:0003677molecular_functionDNA binding
GO:0003917molecular_functionDNA topoisomerase type I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20056.1.A1_at--934--3271Chr06:9840454..9840478 (25 bp)
CAAACTACAACTTGCACACTGCGGG
LOC_Os06g16980
Os.20056.1.A1_at--1029--2771Chr06:9840421..9840445 (25 bp)
AAGAGCATTTGCCTTTATATCCATC
LOC_Os06g16980
Os.20056.1.A1_at--1112--2811Chr06:9840355..9840379 (25 bp)
AAGTTGATGTTTGTTCTGTGCGCAA
LOC_Os06g16980
Os.20056.1.A1_at--54--6851Chr06:9840301..9840325 (25 bp)
GTTTCTGATCAGAGCCGAGGATCCG
LOC_Os06g16980
Os.20056.1.A1_at--262--7371Chr06:9840272..9840296 (25 bp)
GTGACAACGCAGCTCGTCGACAGGT
LOC_Os06g16980
Os.20056.1.A1_at--1146--471Chr06:9840223..9840247 (25 bp)
ATCTGTCTTGGTACAGCCACTGGAA
LOC_Os06g16980
Os.20056.1.A1_at--331--4411Chr06:9840208..9840232 (25 bp)
GCCACTGGAATCTCCATTTTGAGCA
LOC_Os06g16980
Os.20056.1.A1_at--470--1331Chr06:9840183..9840207 (25 bp)
AGAGGTGGCATCTTGCTGCCATGAT
LOC_Os06g16980
Os.20056.1.A1_at--986--7091Chr06:9840154..9840178 (25 bp)
GTCACGGCTCCCATCAATTTTCATT
LOC_Os06g16980
Os.20056.1.A1_at--1025--2512Chr02:16174508..16174531 (24 bp)
AACTTGCCAGATCATACACCCATAG
NONE
Os.20056.1.A1_at--141--2991Chr06:9839962..9839986 (25 bp)
AATGTATACCTTACTCTGTAGCCAG
LOC_Os06g16980
Target Sequence 
CAAACTACAACTTGCACACTGCGGGCAAACAGTAAGAGCATTTGCCTTTATATCCATCTACNACAAAATTCATCNATGGA
TCAGGATCAAGCTTGATGAGAAGTTGATGTTTGTTCTGTGCGCAAAATTGCCAATCCATACATGGCCAGNAATTGTTTCT
GATCAGAGCCGAGGATCCGGGGTGTGACAACGCAGCTCGTCGACAGGTGCAGGAAACCTTTTTGTATGCATCATCTGTCT
TGGTACAGCCACTGGAATCTCCATTTTGAGCAAGAGGTGGCATCTTGCTGCCATGATCACGGTCACGGCTCCCATCAATT
TTCATTTTTGATTCTTTTATTAAATATTTTCTGCAGTTTGTATAGAGCACNAAAAAACTTGCCAGATCATACACCCATAG
CNNTTTTTTTTTTCTTTCNGTGGCAAGTGAACTCAAGCTGCANGCTAATGTCGTTACAAAGCAGTATGTGTTAACCACAA
ATTTTGCTTGTTCGCAAATGTATACCTTACTCTGTAGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20056.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis