Browse Element(s) Details


OsAffx.27680.1.S1_at

Description tigr:9634.m01708
TID=OsAffx.27680.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC079179 Putative o-methyltransferase ZRP4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1696010/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16920NANA6+9807459..9807935expressed protein
LOC_Os06g16930Os.2987.3.S1_x_at2/116+9812601..9813413retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16940NANA6+9815571..9817613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16950OsAffx.15464.1.S1_x_at10/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.15464.1.S1_at9/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.2606.1.S1_at2/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.32163.2.S1_at2/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.8939.1.S1_x_at1/116+9821442..9823910hypothetical protein
LOC_Os06g16960OsAffx.27680.1.S1_at10/116+9831188..9833592O-methyltransferase family protein
LOC_Os06g16970OsAffx.4855.1.S1_at11/116+9836651..9837052hypothetical protein
LOC_Os06g16980Os.20056.1.A1_at11/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980OsAffx.24454.2.S1_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980Os.7779.1.S2_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16990OsAffx.15465.1.S1_at11/116+9856524..9857170hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27680.1.S1_at--735--4111Chr06:9833076..9833100 (25 bp)
CGCTTCGTCATGGAGGTCGTGTTCA
LOC_Os06g16960
OsAffx.27680.1.S1_at--1117--8791Chr06:9833033..9833057 (25 bp)
TGTTCCGCGGGATTGGCTCCCTCGT
LOC_Os06g16960
OsAffx.27680.1.S1_at--855--8531Chr06:9832934..9832958 (25 bp)
TGGACCTCCCGCAAGTGGTCAGGAA
LOC_Os06g16960
OsAffx.27680.1.S1_at--203--5671Chr06:9832869..9832893 (25 bp)
GACATGTTTGAGTACGTCCCGCCGG
LOC_Os06g16960
OsAffx.27680.1.S1_at--689--6351NONE
GATGCCGTACTACTCAAGTATGTCT
NONE
OsAffx.27680.1.S1_at--358--6471Chr06:9831425..9831449 (25 bp)
GATACTTAGACGGTGCAAGGAAGCA
LOC_Os06g16960
OsAffx.27680.1.S1_at--628--3211Chr06:9831410..9831434 (25 bp)
CAAGGAAGCAATACCTGCGAGAGAT
LOC_Os06g16960
OsAffx.27680.1.S1_at--658--811Chr06:9831358..9831382 (25 bp)
ATGGTGATTGGATCAGGCTCACAGA
LOC_Os06g16960
OsAffx.27680.1.S1_at--757--6131Chr06:9831335..9831359 (25 bp)
GAGGGACATCTTCAAAGAGACGCAA
LOC_Os06g16960
OsAffx.27680.1.S1_at--661--5991Chr06:9831319..9831343 (25 bp)
GAGACGCAAGTATTGTTTGATCTCT
LOC_Os06g16960
OsAffx.27680.1.S1_at--387--132Chr06:9831242..9831266 (25 bp)
ATTTTCCAAAGCTGGATTTAGTGCC
LOC_Os06g16960
Target Sequence 
CGCTTCGTCATGGAGGTCGTGTTCAGGGAGGGCGGCGGCGACGTGTTCCGCGGGATTGGCTCCCTCGTCGACGTCGGCGG
CGGCCATGGCGCGGCCGCGGCGGCCGTCGCCGCGGCGTTCCCCCATGTCAAGTGCAGCGTGCTGGACCTCCCGCAAGTGG
TCAGGAAGGCGCCACCGGACGCCGGCGACGTGCGGTTCGTCGCCGGCGACATGTTTGAGTACGTCCCGCCGGCAGATGCC
GTACTACTCAAGTATGTCTTGCATTGTTTTGGTGATGATGATTGTGTCAAGATACTTAGACGGTGCAAGGAAGCAATACC
TGCGAGAGATGCTGGAGGAAAGGTGATAATCATAAATATGGTGATTGGATCAGGCTCACAGAGGGACATCTTCAAAGAGA
CGCAAGTATTGTTTGATCTCTACATGATGTACATAGATGGGGTTGAGAGAGAGGAAAAAGAATGGGAAAATATATTTTCC
AAAGCTGGATTTAGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis