Browse Element(s) Details


OsAffx.4855.1.S1_at

Description tigr:9634.m01709
TID=OsAffx.4855.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1697011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16930Os.2987.3.S1_x_at2/116+9812601..9813413retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16940NANA6+9815571..9817613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16950OsAffx.15464.1.S1_x_at10/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.15464.1.S1_at9/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.2606.1.S1_at2/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.32163.2.S1_at2/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.8939.1.S1_x_at1/116+9821442..9823910hypothetical protein
LOC_Os06g16960OsAffx.27680.1.S1_at10/116+9831188..9833592O-methyltransferase family protein
LOC_Os06g16970OsAffx.4855.1.S1_at11/116+9836651..9837052hypothetical protein
LOC_Os06g16980Os.20056.1.A1_at11/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980OsAffx.24454.2.S1_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980Os.7779.1.S2_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16990OsAffx.15465.1.S1_at11/116+9856524..9857170hypothetical protein
LOC_Os06g17000Os.51972.1.S1_at11/116+9860879..9862939BURP domain containing protein, expressed
LOC_Os06g17000OsAffx.4876.1.S1_x_at1/116+9860879..9862939BURP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4855.1.S1_at--984--8291Chr06:9836860..9836884 (25 bp)
GGCTTCTTCGGCACAGTGGCAGAGA
LOC_Os06g16970
OsAffx.4855.1.S1_at--562--8871Chr06:9836829..9836853 (25 bp)
TGAGGCAAGGAGGTGATTTCTCCCC
LOC_Os06g16970
OsAffx.4855.1.S1_at--453--10751Chr06:9836803..9836827 (25 bp)
TTGACAGCTTATGCTCTTGTCCCAC
LOC_Os06g16970
OsAffx.4855.1.S1_at--108--10431Chr06:9836795..9836819 (25 bp)
TTATGCTCTTGTCCCACTCGGTTGT
LOC_Os06g16970
OsAffx.4855.1.S1_at--846--1991Chr06:9836780..9836804 (25 bp)
ACTCGGTTGTTTGCGTCATGTCCAT
LOC_Os06g16970
OsAffx.4855.1.S1_at--538--4651Chr06:9836768..9836792 (25 bp)
GCGTCATGTCCATGGTGATGGTTTC
LOC_Os06g16970
OsAffx.4855.1.S1_at--574--8871Chr06:9836753..9836777 (25 bp)
TGATGGTTTCTTGGGCTTTCGGGCT
LOC_Os06g16970
OsAffx.4855.1.S1_at--446--10311Chr06:9836737..9836761 (25 bp)
TTTCGGGCTCTTGGCAATGCTGGAC
LOC_Os06g16970
OsAffx.4855.1.S1_at--592--611Chr06:9836721..9836745 (25 bp)
ATGCTGGACAGGTGAGAGTACTCCC
LOC_Os06g16970
OsAffx.4855.1.S1_at--699--6011Chr06:9836708..9836732 (25 bp)
GAGAGTACTCCCAGCGATTTTTATA
LOC_Os06g16970
OsAffx.4855.1.S1_at--893--10351Chr06:9836690..9836714 (25 bp)
TTTTATATGGCTCGCGCCTAACATC
LOC_Os06g16970
Target Sequence 
GGCTTCTTCGGCACAGTGGCAGAGAGGCGGGTGAGGCAAGGAGGTGATTTCTCCCCCTTGACAGCTTATGCTCTTGTCCC
ACTCGGTTGTTTGCGTCATGTCCATGGTGATGGTTTCTTGGGCTTTCGGGCTCTTGGCAATGCTGGACAGGTGAGAGTAC
TCCCAGCGATTTTTATATGGCTCGCGCCTAACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis