Browse Element(s) Details


OsAffx.8939.1.S1_x_at

Description gb:NM_193658.1
DB_XREF= gi:34914399
GEN=B1168H06.22
TID=OsAffx.8939.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1168H06.22 (B1168H06.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g444406/11hypothetical protein
LOC_Os04g100405/11hypothetical protein
LOC_Os09g211895/11
LOC_Os01g388005/11hypothetical protein
LOC_Os09g091705/11hypothetical protein
LOC_Os07g352504/11hypothetical protein
LOC_Os09g088104/11hypothetical protein
LOC_Os11g125504/11hypothetical protein
LOC_Os02g260143/11Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os02g312593/11
LOC_Os04g085403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g266491/11
LOC_Os12g259201/11hypothetical protein
LOC_Os02g140401/11hypothetical protein
LOC_Os04g010891/11
LOC_Os02g142401/11hypothetical protein
LOC_Os09g215301/11hypothetical protein
LOC_Os05g444501/11transposon protein, putative, unclassified
LOC_Os06g169501/11hypothetical protein
LOC_Os09g010301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44410NANA5+25763136..25764371hypothetical protein
LOC_Os05g44420Os.52491.1.A1_at11/115+25771082..25772335expressed protein
LOC_Os05g44430OsAffx.15100.1.S1_at11/115+25774170..25775874hypothetical protein
LOC_Os05g44440OsAffx.8939.1.S1_x_at6/115+25778494..25779154hypothetical protein
LOC_Os05g44440OsAffx.8939.1.S1_at3/115+25778494..25779154hypothetical protein
LOC_Os05g44450OsAffx.8939.1.S1_at2/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450OsAffx.2606.1.S1_at2/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450OsAffx.8939.1.S1_x_at1/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450OsAffx.1436.1.S1_x_at1/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44450Os.10731.2.A1_at1/115+25785052..25786815transposon protein, putative, unclassified
LOC_Os05g44460NANA5+25794514..25797153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44470NANA5+25797753..25798574retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44480NANA5+25799863..25801050retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8939.1.S1_x_at--767--531100Chr12:5367623..5367647 (25 bp)
GAAGGTGAAATAATAAGTCGGCGAA
NONE
OsAffx.8939.1.S1_x_at--566--71792Chr12:20366193..20366217 (25 bp)
GTCGGCGAAAACATAATCATCCATT
NONE
OsAffx.8939.1.S1_x_at--210--307107Chr12:11563670..11563694 (25 bp)
AATCATCCATTAGCAACAGCGGAGA
NONE
OsAffx.8939.1.S1_x_at--610--32721Chr09:551321..551345 (25 bp)
CAACAGCGGAGATGTCAGGGTCGAT
NONE
OsAffx.8939.1.S1_x_at--659--755Chr12:20366231..20366252 (22 bp)
ATGTCAGGGTCGATGAAGCAGAGCT
NONE
OsAffx.8939.1.S1_x_at--47--505117Chr12:6172459..6172479 (21 bp)
GCAGAGCTGTTGTAGATGCTTCACT
NONE
OsAffx.8939.1.S1_x_at--52--49199Chr12:22234012..22234036 (25 bp)
GCTTCACTTGGAGGAGAGTTGATGT
NONE
OsAffx.8939.1.S1_x_at--1066--8791Chr01:18875011..18875035 (25 bp)
TGTTGTTGTCCAGCTCGTCCAAACT
NONE
OsAffx.8939.1.S1_x_at--672--6631Chr01:18875015..18875039 (25 bp)
GTTGTCCAGCTCGTCCAAACTGAAA
NONE
OsAffx.8939.1.S1_x_at--590--7271Chr01:18875018..18875042 (25 bp)
GTCCAGCTCGTCCAAACTGAAATAT
NONE
OsAffx.8939.1.S1_x_at--268--89367Chr12:20286628..20286652 (25 bp)
TGAAGTAGAATGTCTGTTCCGAAGC
NONE
Target Sequence 
GAAGGTGAAATAATAAGTCGGCGAAAACATAATCATCCATTAGCAACAGCGGAGATGTCAGGGTCGATGAAGCAGAGCTG
TTGTAGATGCTTCACTTGGAGGAGAGTTGATGTTGTTGTCCAGCTCGTCCAAACTGAAATATTTGTTGAAGTAGAATGTC
TGTTCCGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8939.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis